Groups used for this test run

Group nameMethods
AssertsAlignmentTest.testAssertDatasetIsNormalised()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
FunctionalCrossRef2xmlTests.openCrossrefsForEnsemblTwice()[pri:0, instance:jalview.io.CrossRef2xmlTests@1c05a54d]
DnaTest.testTranslateCdna_sequenceOrderIndependent()[pri:0, instance:jalview.analysis.DnaTest@29d2d081]
AlignSeqTest.testExtractGaps()[pri:0, instance:jalview.analysis.AlignSeqTest@68ed96ca]
AlignmentUtilsTests.testTransferFeatures()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
AnnotationChooserTest.testSelectType_hideForAll()[pri:0, instance:jalview.gui.AnnotationChooserTest@63a5e46c]
FeatureColourFinderTest.testFindFeatureColour_transparencySingleFeature()[pri:0, instance:jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f]
ScoreMatrixTest.testGetMatrix()[pri:0, instance:jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7]
MappingUtilsTest.testMapSequenceGroup_sharedDataset()[pri:0, instance:jalview.util.MappingUtilsTest@54e81b21]
FeatureMatcherTest.testToString()[pri:0, instance:jalview.datamodel.features.FeatureMatcherTest@32c0915e]
AllRowsIteratorTest.testRemove()[pri:0, instance:jalview.datamodel.AllRowsIteratorTest@18e8473e]
SequenceTest.testGetSequenceFeatures()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
MapListTest.testLocateInFrom_withIntrons()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
StringUtilsTest.testGetLastToken()[pri:0, instance:jalview.util.StringUtilsTest@632aa1a3]
ColumnSelectionTest.testMinColumnSelection()[pri:0, instance:jalview.datamodel.ColumnSelectionTest@3ad394e6]
JvOptionPaneTest.showConfirmDialogFamilyTest()[pri:0, instance:jalview.gui.JvOptionPaneTest@25243bc1]
AnnotationColourGradientTest.testShadeCalculation_aboveThreshold()[pri:0, instance:jalview.schemes.AnnotationColourGradientTest@3b718392]
AlignViewportTest.testDeregisterMapping_withReference()[pri:0, instance:jalview.gui.AlignViewportTest@437e951d]
ComparisonTest.testPID_ungappedOnly()[pri:0, instance:jalview.util.ComparisonTest@54f5f647]
EnsemblCdsTest.testIsValidReference()[pri:0, instance:jalview.ext.ensembl.EnsemblCdsTest@22ee2d0]
EnsemblGenomeTest.testGetIdentifyingFeatures()[pri:0, instance:jalview.ext.ensembl.EnsemblGenomeTest@3e792ce3]
SequenceTest.testGetAnnotation_forLabel()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
VCFLoaderTest.testDoLoad_vepCsq()[pri:0, instance:jalview.io.vcf.VCFLoaderTest@17ae98d7]
StructureViewerTest.testGetSequencesForPdbs()[pri:0, instance:jalview.gui.StructureViewerTest@58cd06cb]
DnaTest.testTranslateCdna_hiddenColumns()[pri:0, instance:jalview.analysis.DnaTest@29d2d081]
ComparisonTest.testIsNucleotideSequence()[pri:0, instance:jalview.util.ComparisonTest@54f5f647]
SequenceTest.testGetSubsequence()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
FeatureColourFinderTest.testFindFeatureColour_multipleFeaturesAtPositionNoTransparency()[pri:0, instance:jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f]
JvSwingUtilsTest.testWrapTooltip_shortText()[pri:0, instance:jalview.gui.JvSwingUtilsTest@1e287667]
ViewportRangesTest.testGetAbsoluteAlignmentHeight()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
EnsemblSeqProxyTest.getGenomicRangesFromFeatures()[pri:0, instance:jalview.ext.ensembl.EnsemblSeqProxyTest@3c1e3314]
FinderTest.testFindNext()[pri:0, instance:jalview.analysis.FinderTest@3a7b503d]
MatcherTest.testHashCode()[pri:0, instance:jalview.util.matcher.MatcherTest@2899a8db]
MappingTest.testIntersectVisContigs()[pri:0, instance:jalview.datamodel.MappingTest@323e8306]
EditCommandTest.testUndo_multipleCommands()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
FeatureRendererTest.testFindAllFeatures()[pri:0, instance:jalview.renderer.seqfeatures.FeatureRendererTest@2bffa76d]
OverviewDimensionsShowHiddenTest.testFromMouseWithHiddenColsAtStart()[pri:0, instance:jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620]
SparseMatrixTest.testTqli_matchesMatrix()[pri:0, instance:jalview.math.SparseMatrixTest@5a772895]
AlignmentTest.testFindOrCreateForNullCalcId()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
EditCommandTest.testAppendEdit_deleteGap()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
PDBChainTest.testGetNewlineString()[pri:0, instance:mc_view.PDBChainTest@3c49fab6]
ScalePanelTest.testBuildPopupMenu()[pri:0, instance:jalview.gui.ScalePanelTest@420bc288]
SequenceAnnotationReportTest.testCreateSequenceAnnotationReport()[pri:0, instance:jalview.io.SequenceAnnotationReportTest@71652c98]
AlignViewportTest.testGetConsensusSeq()[pri:0, instance:jalview.gui.AlignViewportTest@437e951d]
UrlLinkTableModelTest.testRowInsert()[pri:0, instance:jalview.urls.UrlLinkTableModelTest@5bbbdd4b]
ScoreMatrixTest.testComputePairwiseScores()[pri:0, instance:jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7]
TrimRegionCommandTest.testTrimLeft_noColumns()[pri:0, instance:jalview.commands.TrimRegionCommandTest@4ced35ed]
AnnotationSorterTest.testSort_timingUnsorted()[pri:0, instance:jalview.analysis.AnnotationSorterTest@50b8ae8d]
AlignmentTest.testAlignAs_cdnaAsProtein()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
AnnotationLabelsTest.testGetTooltip()[pri:0, instance:jalview.gui.AnnotationLabelsTest@49ef32e0]
PairwiseAlignmentPanelTest.testConstructor_noSelectionGroup()[pri:0, instance:jalview.gui.PairwiseAlignmentPanelTest@4201a617]
EditCommandTest.testAddEdit_removeAllGaps()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
ScoreMatrixTest.testConstructor()[pri:0, instance:jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7]
MappingUtilsTest.testMapSequenceGroup_region()[pri:0, instance:jalview.util.MappingUtilsTest@54e81b21]
SequenceFeaturesTest.testFindFeatures()[pri:0, instance:jalview.datamodel.features.SequenceFeaturesTest@70f43b45]
PDBChainTest.testPrint()[pri:0, instance:mc_view.PDBChainTest@3c49fab6]
FTSRestClientTest.getColumnClassTest()[pri:0, instance:jalview.fts.core.FTSRestClientTest@11ee02f8]
MappingUtilsTest.testMapColumnSelection_hiddenColumns()[pri:0, instance:jalview.util.MappingUtilsTest@54e81b21]
ScoreMatrixFileTest.testParseMatrix_aaindex_mMissing()[pri:0, instance:jalview.io.ScoreMatrixFileTest@3d829787]
TCoffeeScoreFileTest.testGetAsArray()[pri:0, instance:jalview.io.TCoffeeScoreFileTest@60b85ba1]
EnsemblGeneTest.testGetGenomicRangesFromFeatures_ncRNA_gene_reverseStrand()[pri:0, instance:jalview.ext.ensembl.EnsemblGeneTest@7bfc3126]
OverviewDimensionsShowHiddenTest.testSetBoxFromViewportHiddenColsInMiddle()[pri:0, instance:jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620]
HiddenColumnsTest.testGetVisibleColsIterator()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
TCoffeeScoreFileTest.testReadHeader()[pri:0, instance:jalview.io.TCoffeeScoreFileTest@60b85ba1]
UrlLinkTest.testMakeUrlWithRegex()[pri:0, instance:jalview.util.UrlLinkTest@20765ed5]
VisibleRowsIteratorTest.testHasNextAndNextNoHidden()[pri:0, instance:jalview.datamodel.VisibleRowsIteratorTest@27a0a5a2]
ViewportRangesTest.testViewportRanges()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
ResidueCountTest.testGetSymbolCounts_peptide()[pri:0, instance:jalview.datamodel.ResidueCountTest@24b52d3e]
FTSRestClientTest.getDataColumnByNameOrCode()[pri:0, instance:jalview.fts.core.FTSRestClientTest@11ee02f8]
Jalview2xmlTests.testMergeDatasetsforViews()[pri:0, instance:jalview.project.Jalview2xmlTests@39fc6b2c]
AlignmentAnnotationUtilsTest.testGetShownHiddenTypes_forSelectionGroup()[pri:0, instance:jalview.analysis.AlignmentAnnotationUtilsTest@6d1310f6]
SequenceTest.testFindPosition_withCursor()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
ChimeraCommandsTest.testOpenSession()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
FeaturesFileTest.simpleGff3RelaxedIdMatching()[pri:0, instance:jalview.io.FeaturesFileTest@214894fc]
RangeElementsIteratorTest.testHasNextAndNextStartHidden()[pri:0, instance:jalview.datamodel.RangeElementsIteratorTest@3301500b]
AlignedCodonIteratorTest.testNext_incompleteCodon()[pri:0, instance:jalview.datamodel.AlignedCodonIteratorTest@74d7184a]
EditCommandTest.testCut_withFeatures_exhaustive()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
FeaturesFileTest.testParseFilters()[pri:0, instance:jalview.io.FeaturesFileTest@214894fc]
AnnotationChooserTest.testSelectType_hideForSelected()[pri:0, instance:jalview.gui.AnnotationChooserTest@63a5e46c]
FeatureMatcherSetTest.testToStableString()[pri:0, instance:jalview.datamodel.features.FeatureMatcherSetTest@33aa93c]
OverviewDimensionsHideHiddenTest.testSetBoxFromViewportHiddenColsAtStart()[pri:0, instance:jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2]
AlignViewControllerTest.testSelectColumnsWithHighlight()[pri:0, instance:jalview.controller.AlignViewControllerTest@2c22a348]
AlignmentTest.testSetDataset_selfReference()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
ChimeraXCommandsTest.testOpenSession()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569]
ColumnSelectionTest.testGetSelected_isReadOnly()[pri:0, instance:jalview.datamodel.ColumnSelectionTest@3ad394e6]
CodingUtilsTest.testDecodeNucleotide()[pri:0, instance:jalview.analysis.CodingUtilsTest@255990cc]
IdentifiersUrlProviderTest.testDefaultUrl()[pri:0, instance:jalview.urls.IdentifiersUrlProviderTest@5987e932]
SequenceTest.testDeriveSequence_noDatasetUngapped()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
AlignmentPanelTest.testCalculateIdWidth_withMaxWidth()[pri:0, instance:jalview.gui.AlignmentPanelTest@77b325b3]
MapListTest.testConstructor_mergeRanges()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
FeatureRendererTest.testGetColour()[pri:0, instance:jalview.renderer.seqfeatures.FeatureRendererTest@2bffa76d]
BioJsHTMLOutputTest.getJalviewAlignmentAsJsonString()[pri:0, instance:jalview.io.BioJsHTMLOutputTest@74a9c4b0]
AlignmentUtilsTests.testMakeCdsAlignment_alternativeTranscripts()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
UrlLinkTableModelTest.testRowDelete()[pri:0, instance:jalview.urls.UrlLinkTableModelTest@5bbbdd4b]
FeaturesFileTest.readGff3File()[pri:0, instance:jalview.io.FeaturesFileTest@214894fc]
MappingUtilsTest.testContains()[pri:0, instance:jalview.util.MappingUtilsTest@54e81b21]
SeqsetUtilsTest.testSeqFeatureAddition()[pri:0, instance:jalview.analysis.SeqsetUtilsTest@2fa7ae9]
FeaturesFileTest.simpleGff3FileLoader()[pri:0, instance:jalview.io.FeaturesFileTest@214894fc]
Jalview2xmlTests.testColourByAnnotScores()[pri:0, instance:jalview.project.Jalview2xmlTests@39fc6b2c]
SeqPanelTest.testAmbiguousAminoAcidGetsStatusMessage()[pri:0, instance:jalview.gui.SeqPanelTest@308a6984]
AnnotationColourGradientTest.testFindColour_aboveThreshold()[pri:0, instance:jalview.schemes.AnnotationColourGradientTest@3b718392]
PymolManagerTest.testGetPostRequest()[pri:0, instance:jalview.ext.pymol.PymolManagerTest@28fa700e]
ViewportRangesTest.testSetViewportStartAndHeight()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
DBRefEntryTest.testUpdateFrom()[pri:0, instance:jalview.datamodel.DBRefEntryTest@42deb43a]
AlignmentUtilsTests.testAddMappedPositions()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
FileFormatsTest.testForName()[pri:0, instance:jalview.io.FileFormatsTest@10567255]
AlignmentUtilsTests.testAlignAsSameSequencesMultipleSubSeq()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
FeatureDistanceModelTest.testFindFeatureAt_PointFeature()[pri:0, instance:jalview.analysis.scoremodels.FeatureDistanceModelTest@3153ddfc]
StockholmFileTest.testAnnotationEquivalence()[pri:0, instance:jalview.io.StockholmFileTest@51bde877]
PIDModelTest.testComputePID_matchLongestSequence()[pri:0, instance:jalview.analysis.scoremodels.PIDModelTest@60afd40d]
AAFrequencyTest.testExtractProfile_countGaps()[pri:0, instance:jalview.analysis.AAFrequencyTest@6e0ff644]
TDBeaconsPanelTest.populateCmbSearchTargetOptionsTest()[pri:0, instance:jalview.fts.threedbeacons.TDBeaconsPanelTest@5b69fd74]
ColorUtilsTest.testGetAWTColorFromName()[pri:0, instance:jalview.util.ColorUtilsTest@4a8b5227]
EmblXmlSourceTest.testGetSequence()[pri:0, instance:jalview.ws.dbsources.EmblXmlSourceTest@2237bada]
SequenceTest.testUpdatePDBIds()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
RotatableMatrixTest.testPrint()[pri:0, instance:jalview.math.RotatableMatrixTest@6ac4944a]
ChimeraXCommandsTest.testGetColourCommand()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569]
EmblFlatFileTest.testParse_noUniprotXref()[pri:0, instance:jalview.io.EmblFlatFileTest@5fd9b663]
SequenceFeatureTest.testIsContactFeature()[pri:0, instance:jalview.datamodel.SequenceFeatureTest@5af5def9]
ChimeraXCommandsTest.testGetSelectedResidues()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569]
ColumnSelectionTest.testHideSelectedColumns()[pri:0, instance:jalview.datamodel.ColumnSelectionTest@3ad394e6]
FinderTest.testFind_regex()[pri:0, instance:jalview.analysis.FinderTest@3a7b503d]
ColorUtilsTest.testParseColourString()[pri:0, instance:jalview.util.ColorUtilsTest@4a8b5227]
PhylipFileTests.testSequentialDataExtraction()[pri:0, instance:jalview.io.PhylipFileTests@79ab3a71]
FeatureRendererTest.testFindFeaturesAtColumn()[pri:0, instance:jalview.renderer.seqfeatures.FeatureRendererTest@2bffa76d]
AlignmentUtilsTests.testAlignSequenceAs_keepIntronGapsOnly()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
IdentifiersUrlProviderTest.testUrlLinks()[pri:0, instance:jalview.urls.IdentifiersUrlProviderTest@5987e932]
SparseMatrixTest.testFillRatio()[pri:0, instance:jalview.math.SparseMatrixTest@5a772895]
MatcherTest.testToString()[pri:0, instance:jalview.util.matcher.MatcherTest@2899a8db]
AlignmentTest.testAddCodonFrame()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
ChimeraCommandsTest.testGetColourCommand()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
ResiduePropertiesTest.testGetSingleCharacterCode()[pri:0, instance:jalview.schemes.ResiduePropertiesTest@1e34c607]
CrossRefTest.testFindXrefSequences_indirectDbrefToNucleotide()[pri:0, instance:jalview.analysis.CrossRefTest@3c8bdd5b]
PymolCommandsTest.testCloseViewer()[pri:0, instance:jalview.ext.pymol.PymolCommandsTest@5f577419]
MatcherTest.testMatches_floatWithStringCondition()[pri:0, instance:jalview.util.matcher.MatcherTest@2899a8db]
ScoreMatrixFileTest.testParseMatrix_ncbiTooManyColumns()[pri:0, instance:jalview.io.ScoreMatrixFileTest@3d829787]
HiddenColumnsTest.testRegionsToString()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
JvOptionPaneTest.showInputDialogFamilyTest()[pri:0, instance:jalview.gui.JvOptionPaneTest@25243bc1]
FTSRestClientTest.getPrimaryKeyColumn()[pri:0, instance:jalview.fts.core.FTSRestClientTest@11ee02f8]
ChimeraCommandsTest.testGetAtomSpec()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
AlignmentTest.testPropagateInsertions()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
AlignmentUtilsTests.testMakeCdsAlignment_filterProducts()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
PDBEntryTest.testConstructor_fromDbref()[pri:0, instance:jalview.datamodel.PDBEntryTest@7561db12]
SequenceFeaturesTest.testSortFeatures()[pri:0, instance:jalview.datamodel.features.SequenceFeaturesTest@70f43b45]
PIDModelTest.testGetPairwiseScore()[pri:0, instance:jalview.analysis.scoremodels.PIDModelTest@60afd40d]
AlignmentUtilsTests.testGetSequencesByName()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
StringUtilsTest.testToSentenceCase()[pri:0, instance:jalview.util.StringUtilsTest@632aa1a3]
PDBChainTest.testMakeBond()[pri:0, instance:mc_view.PDBChainTest@3c49fab6]
SetUtilsTest.testCountDisjunction()[pri:0, instance:jalview.util.SetUtilsTest@273c947f]
JmolParserTest.testParse_alternativeResidues()[pri:0, instance:jalview.ext.jmol.JmolParserTest@6b739528]
RfamSeedTest.testGetURL()[pri:0, instance:jalview.ws.dbsources.RfamSeedTest@64d7b720]
HiDPISettingTest2.testHiDPISettings(int)[pri:0, instance:jalview.bin.HiDPISettingTest2@3c321bdb]
SequenceFeaturesTest.testConstructor()[pri:0, instance:jalview.datamodel.features.SequenceFeaturesTest@70f43b45]
ClustalxColourSchemeTest.testFindColour_ignoreGaps()[pri:0, instance:jalview.schemes.ClustalxColourSchemeTest@49bf29c6]
CrossRefTest.testSameSequence()[pri:0, instance:jalview.analysis.CrossRefTest@3c8bdd5b]
ColumnSelectionTest.testInvertColumnSelection()[pri:0, instance:jalview.datamodel.ColumnSelectionTest@3ad394e6]
ViewportRangesTest.testSetStartSeq()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
RnaTest.testGetSimpleBPs_unmatchedOpener()[pri:0, instance:jalview.analysis.RnaTest@4d0402b]
AllColsIteratorTest.testHasNextAndNext()[pri:0, instance:jalview.datamodel.AllColsIteratorTest@5cbf9e9f]
FeatureStoreTest.testGetFeaturesForGroup()[pri:0, instance:jalview.datamodel.features.FeatureStoreTest@106faf11]
PymolCommandsTest.testColourByCharge()[pri:0, instance:jalview.ext.pymol.PymolCommandsTest@5f577419]
AnnotationChooserTest.testBuildApplyToOptionsPanel_noSelectionGroup()[pri:0, instance:jalview.gui.AnnotationChooserTest@63a5e46c]
MatcherTest.testMatches_long()[pri:0, instance:jalview.util.matcher.MatcherTest@2899a8db]
AlignFrameTest.testNewView_dsRefPreserved()[pri:0, instance:jalview.gui.AlignFrameTest@f325091]
ScoreMatrixTest.testGetSize()[pri:0, instance:jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7]
FormatTest.testFormat_scientific_overflow()[pri:0, instance:jalview.util.FormatTest@4a67318f]
OverviewDimensionsHideHiddenTest.testSetBoxFromViewportHiddenRowsAtEnd()[pri:0, instance:jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2]
ViewportRangesTest.testScrollUp()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
HiddenColumnsTest.testCopyConstructor2()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
FeaturesFileTest.testParse_pureGff3()[pri:0, instance:jalview.io.FeaturesFileTest@214894fc]
MapListTest.testLocateInTo_withOverlap()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
JmolCommandsTest.testGetColourBySequenceCommands_hiddenColumns()[pri:0, instance:jalview.ext.jmol.JmolCommandsTest@3ef41c66]
UrlLinkTableModelTest.testEditable()[pri:0, instance:jalview.urls.UrlLinkTableModelTest@5bbbdd4b]
ViewportRangesTest.testSetEndSeq()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
FinderTest.testFindNext_inSelection()[pri:0, instance:jalview.analysis.FinderTest@3a7b503d]
GeneticCodesTest.testGetCodeTables()[pri:0, instance:jalview.analysis.GeneticCodesTest@751e664e]
JalviewColourSchemeTest.testGetSchemeClass()[pri:0, instance:jalview.schemes.JalviewColourSchemeTest@6c44052e]
Jalview2xmlTests.testStoreAndRecoverGroupRepSeqs()[pri:0, instance:jalview.project.Jalview2xmlTests@39fc6b2c]
SequenceAnnotationReportTest.testCreateSequenceAnnotationReport_withEllipsis()[pri:0, instance:jalview.io.SequenceAnnotationReportTest@71652c98]
HiddenColumnsTest.testHasHiddenColumns()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
FeatureMatcherSetTest.testIsEmpty()[pri:0, instance:jalview.datamodel.features.FeatureMatcherSetTest@33aa93c]
MapListTest.testTraverse()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
MatrixTest.testCopy()[pri:0, instance:jalview.math.MatrixTest@59221b97]
ChimeraCommandsTest.testLoadFile()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
MemorySettingTest.testGetMemorySetting()[pri:0, instance:jalview.bin.MemorySettingTest@3abd581e]
AnnotationChooserTest.testIsInActionScope_unselectedScope()[pri:0, instance:jalview.gui.AnnotationChooserTest@63a5e46c]
SeqPanelTest.testFindColumn_wrapped()[pri:0, instance:jalview.gui.SeqPanelTest@308a6984]
AlignmentTest.testDeleteSequenceBySeq()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
JSONFileTest.isShowSeqFeaturesSet()[pri:0, instance:jalview.io.JSONFileTest@54336c81]
OverviewDimensionsHideHiddenTest.testFromMouseWithHiddenRowsAtStart()[pri:0, instance:jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2]
FeatureColourTest.testGetColor_simpleColour()[pri:0, instance:jalview.schemes.FeatureColourTest@7668d560]
ChimeraXCommandsTest.testCloseViewer()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569]
SequenceGroupTest.testAddSequence()[pri:0, instance:jalview.datamodel.SequenceGroupTest@3a45c42a]
CommandLineOperations.testHeadlessModeOutputOperations(java.lang.String, java.lang.String, java.lang.String, boolean, int, int)[pri:0, instance:jalview.bin.CommandLineOperations@33c2bd]
FeatureColourFinderTest.testFindFeatureColour_featureTypeNotDisplayed()[pri:0, instance:jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f]
FeatureColourFinderTest.testNoFeaturesDisplayed()[pri:0, instance:jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f]
EmblXmlSourceTest.testAdjustForProteinLength()[pri:0, instance:jalview.ws.dbsources.EmblXmlSourceTest@2237bada]
FormatTest.testAppendPercentage()[pri:0, instance:jalview.util.FormatTest@4a67318f]
HiddenSequencesTest.testAdjustForHiddenSeqs()[pri:0, instance:jalview.datamodel.HiddenSequencesTest@6754ef00]
AlignmentUtilsTests.testAlignSequenceAs_withMapping_noIntrons()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
AnnotationFileIOTest.testAnnotateAlignmentView()[pri:0, instance:jalview.io.AnnotationFileIOTest@3b65e559]
MappingUtilsTest.testRemoveStartPositions_reverseStrand()[pri:0, instance:jalview.util.MappingUtilsTest@54e81b21]
JmolViewerTest.testSingleSeqViewJMol()[pri:0, instance:jalview.ext.jmol.JmolViewerTest@622ef26a]
MatcherTest.testMatches_float()[pri:0, instance:jalview.util.matcher.MatcherTest@2899a8db]
SparseShortArrayTest.testPut()[pri:0, instance:jalview.ext.android.SparseShortArrayTest@7dd712e8]
FTSRestClientTest.getDefaultResponsePageSize()[pri:0, instance:jalview.fts.core.FTSRestClientTest@11ee02f8]
HiddenColumnsTest.testHideColumns()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
MatchTest.testEquals()[pri:0, instance:jalview.datamodel.MatchTest@4acf72b6]
OverviewDimensionsShowHiddenTest.testSetBoxFromViewportHiddenColsAtEnd()[pri:0, instance:jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620]
AlignedCodonFrameTest.testRealiseWith()[pri:0, instance:jalview.datamodel.AlignedCodonFrameTest@7bd69e82]
HiddenColumnsTest.testHideInsertionsFor()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
HiddenSequencesTest.testAdjustHeightSequenceAdded()[pri:0, instance:jalview.datamodel.HiddenSequencesTest@6754ef00]
StringUtilsTest.testSeparatorListToArray()[pri:0, instance:jalview.util.StringUtilsTest@632aa1a3]
SequenceAnnotationReportTest.testAppendFeature_virtualFeature()[pri:0, instance:jalview.io.SequenceAnnotationReportTest@71652c98]
VisibleContigsIteratorTest.testVisibleRegionsAtHiddenEdges()[pri:0, instance:jalview.datamodel.VisibleContigsIteratorTest@33d05366]
MapListTest.testGetOverlapsInTo_withIntrons()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
UrlProviderTest.testSetDefaultUrl()[pri:0, instance:jalview.urls.UrlProviderTest@438bad7c]
PDBFTSPanelTest.testgetPDBIdwithSpecifiedChain()[pri:0, instance:jalview.fts.service.pdb.PDBFTSPanelTest@4102b1b1]
ScoreMatrixTest.testBuildSymbolIndex_nonAscii()[pri:0, instance:jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7]
AlignmentTest.testDeleteAllAnnotations_excludingAutocalculated()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
RnaTest.testIsCanonicalOrWobblePair()[pri:0, instance:jalview.analysis.RnaTest@4d0402b]
AlignCalcManagerTest.testRemoveWorkerForAnnotation()[pri:0, instance:jalview.workers.AlignCalcManagerTest@4c432866]
SequenceTest.testTransferAnnotation()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
DBRefUtilsTest.testSearchRefs_wildcardAccessionid()[pri:0, instance:jalview.util.DBRefUtilsTest@6979efad]
ResidueCountTest.testGetModalCount()[pri:0, instance:jalview.datamodel.ResidueCountTest@24b52d3e]
ScoreMatrixFileTest.testParseMatrix_ncbiNotEnoughColumns()[pri:0, instance:jalview.io.ScoreMatrixFileTest@3d829787]
AAFrequencyTest.testExtractProfile()[pri:0, instance:jalview.analysis.AAFrequencyTest@6e0ff644]
PDBChainTest.testMakeResidueList_withTempFactor()[pri:0, instance:mc_view.PDBChainTest@3c49fab6]
UserColourSchemeTest.testToAppletParameter()[pri:0, instance:jalview.schemes.UserColourSchemeTest@31198ceb]
AlignViewportTest.testSetSelectionGroup()[pri:0, instance:jalview.gui.AlignViewportTest@437e951d]
AlignmentUtilsTests.testMakeCdsAlignment()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
AnnotationChooserTest.testBuildShowHideOptionsPanel()[pri:0, instance:jalview.gui.AnnotationChooserTest@63a5e46c]
TDBeaconsFTSRestClientTest.getSearchableDataColumns()[pri:0, instance:jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100]
AlignmentUtilsTests.testTransferFeatures_withSelect()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
RangeElementsIteratorTest.testHasNextAndNextNoHidden()[pri:0, instance:jalview.datamodel.RangeElementsIteratorTest@3301500b]
FeatureRendererTest.testFindComplementFeaturesAtResidue()[pri:0, instance:jalview.renderer.seqfeatures.FeatureRendererTest@2bffa76d]
ResidueColourSchemeTest.testGetName()[pri:0, instance:jalview.schemes.ResidueColourSchemeTest@530a8454]
ScoreMatrixFileTest.testParseMatrix_ncbiNotEnoughRows()[pri:0, instance:jalview.io.ScoreMatrixFileTest@3d829787]
AllColsIteratorTest.testOneElement()[pri:0, instance:jalview.datamodel.AllColsIteratorTest@5cbf9e9f]
SequenceOntologyTest.testIsSequenceVariant()[pri:0, instance:jalview.ext.so.SequenceOntologyTest@3f3c966c]
AlignmentTest.testCopyConstructor()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
ChimeraCommandsTest.testGetResidueSpec()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
RotatableMatrixTest.testVectorMultiply()[pri:0, instance:jalview.math.RotatableMatrixTest@6ac4944a]
AlignedCodonFrameTest.testIsRealisableWith()[pri:0, instance:jalview.datamodel.AlignedCodonFrameTest@7bd69e82]
OverviewDimensionsShowHiddenTest.testSetBoxFromViewport()[pri:0, instance:jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620]
EnsemblProteinTest.testGetAccesionIdFromQuery()[pri:0, instance:jalview.ext.ensembl.EnsemblProteinTest@53bc1328]
OverviewDimensionsHideHiddenTest.testFromMouseWithHiddenRowsInMiddle()[pri:0, instance:jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2]
StructureSelectionManagerTest.testRegisterMappings()[pri:0, instance:jalview.structure.StructureSelectionManagerTest@5dda14d0]
MapListTest.testAddMapList_contiguous()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
SequenceAnnotationReportTest.testAppendFeature_colouredByAttribute()[pri:0, instance:jalview.io.SequenceAnnotationReportTest@71652c98]
OverviewDimensionsHideHiddenTest.testSetBoxFromViewportHiddenRowsInMiddle()[pri:0, instance:jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2]
MatrixTest.testPreMultiply_tooFewColumns()[pri:0, instance:jalview.math.MatrixTest@59221b97]
PhylipFileTests.testInterleavedDataExtraction()[pri:0, instance:jalview.io.PhylipFileTests@79ab3a71]
AlignmentPanelTest.testCalculateIdWidth_noArgs()[pri:0, instance:jalview.gui.AlignmentPanelTest@77b325b3]
ColourMenuHelperTest.testAddMenuItems_forAlignFrame()[pri:0, instance:jalview.gui.ColourMenuHelperTest@eadb475]
AlignedCodonIteratorTest.testNext_unmappedPeptide()[pri:0, instance:jalview.datamodel.AlignedCodonIteratorTest@74d7184a]
HiddenSequencesTest.testFindIndexWithoutHiddenSeqs()[pri:0, instance:jalview.datamodel.HiddenSequencesTest@6754ef00]
CrossRefTest.testFindXDbRefs()[pri:0, instance:jalview.analysis.CrossRefTest@3c8bdd5b]
FeaturesFileTest.testParse_jalviewFeaturesOnly()[pri:0, instance:jalview.io.FeaturesFileTest@214894fc]
ChimeraXCommandsTest.testColourByCharge()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569]
JvOptionPaneTest.showInternalConfirmDialogFamilyTest()[pri:0, instance:jalview.gui.JvOptionPaneTest@25243bc1]
ComparisonTest.testPID_includingGaps()[pri:0, instance:jalview.util.ComparisonTest@54f5f647]
FeatureColourTest.testCopyConstructor()[pri:0, instance:jalview.schemes.FeatureColourTest@7668d560]
SparseMatrixTest.testPreMultiply()[pri:0, instance:jalview.math.SparseMatrixTest@5a772895]
AnnotationRowFilterTest.testGetAnnotationItems()[pri:0, instance:jalview.gui.AnnotationRowFilterTest@6bd51ed8]
StringUtilsTest.testListToDelimitedString()[pri:0, instance:jalview.util.StringUtilsTest@632aa1a3]
JalviewExportPropertiesTests.testImportExportPeriodGaps()[pri:0, instance:jalview.io.JalviewExportPropertiesTests@35e52059]
VCFLoaderTest.testDoLoad()[pri:0, instance:jalview.io.vcf.VCFLoaderTest@17ae98d7]
DBRefUtilsTest.testSearchRefs_withMapping()[pri:0, instance:jalview.util.DBRefUtilsTest@6979efad]
SequenceFeaturesTest.testHasFeatures()[pri:0, instance:jalview.datamodel.features.SequenceFeaturesTest@70f43b45]
TDBeaconsFTSRestClientTest.testMockTDBRequest()[pri:0, instance:jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100]
UniprotTest.testGetUniprotSequence()[pri:0, instance:jalview.ws.dbsources.UniprotTest@30272916]
SeqPanelTest.testFindMousePosition_wrapped_scaleAbove()[pri:0, instance:jalview.gui.SeqPanelTest@308a6984]
ColourSchemePropertyTest.testGetColourScheme()[pri:0, instance:jalview.schemes.ColourSchemePropertyTest@7ee55e70]
MatrixTest.testPreMultiply()[pri:0, instance:jalview.math.MatrixTest@59221b97]
ScoreMatrixFileTest.testParseMatrix_ncbiNameMissing()[pri:0, instance:jalview.io.ScoreMatrixFileTest@3d829787]
UserColourSchemeTest.testParseAppletParameter()[pri:0, instance:jalview.schemes.UserColourSchemeTest@31198ceb]
FeatureAttributesTest.testAttributeNameComparator()[pri:0, instance:jalview.datamodel.features.FeatureAttributesTest@7692cd34]
ColumnSelectionTest.testSetElementsFrom()[pri:0, instance:jalview.datamodel.ColumnSelectionTest@3ad394e6]
UrlLinkTableModelTest.testCounts()[pri:0, instance:jalview.urls.UrlLinkTableModelTest@5bbbdd4b]
UrlLinkTest.testCreateLinksFromNullSequence()[pri:0, instance:jalview.util.UrlLinkTest@20765ed5]
SequenceFetcherTest.testNoDuplicatesInFetchDbRefs()[pri:0, instance:jalview.ws.SequenceFetcherTest@6105f8a3]
SequenceTest.testAddDBRef()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
AlignmentTest.testAlignAs_dnaAsDna()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
SequenceTest.testInsertGapsAndGapmaps()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
UrlLinkTableModelTest.testRowEditable()[pri:0, instance:jalview.urls.UrlLinkTableModelTest@5bbbdd4b]
EmblFlatFileTest.testParseToRNA()[pri:0, instance:jalview.io.EmblFlatFileTest@5fd9b663]
PymolCommandsTest.testGetAtomSpec_alphaOnly()[pri:0, instance:jalview.ext.pymol.PymolCommandsTest@5f577419]
RfamFullTest.testGetURL()[pri:0, instance:jalview.ws.dbsources.RfamFullTest@6e0d4a8]
SearchResultsTest.testToString()[pri:0, instance:jalview.datamodel.SearchResultsTest@15deb1dc]
AAFrequencyTest.testCalculate_withProfile()[pri:0, instance:jalview.analysis.AAFrequencyTest@6e0ff644]
ParsePropertiesTest.testGetScoresFromDescription()[pri:0, instance:jalview.analysis.ParsePropertiesTest@182b435b]
SequenceTest.testDeleteChars_withDbRefsAndFeatures()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
FeatureMatcherTest.testIsByLabel()[pri:0, instance:jalview.datamodel.features.FeatureMatcherTest@32c0915e]
HiddenColumnsTest.testRevealHiddenColumns()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
ScoreModelsTest.testConstructor()[pri:0, instance:jalview.analysis.scoremodels.ScoreModelsTest@3f2049b6]
ResiduePropertiesTest.testGetDssp3State()[pri:0, instance:jalview.schemes.ResiduePropertiesTest@1e34c607]
DBRefUtilsTest.testSearchRefs_accessionid()[pri:0, instance:jalview.util.DBRefUtilsTest@6979efad]
SearchResultsTest.testMatchContains()[pri:0, instance:jalview.datamodel.SearchResultsTest@15deb1dc]
AllRowsIteratorTest.testLastNext()[pri:0, instance:jalview.datamodel.AllRowsIteratorTest@18e8473e]
PopupMenuTest.testConfigureReferenceAnnotationsMenu()[pri:0, instance:jalview.gui.PopupMenuTest@467f77a5]
AlignmentUtilsTests.testFindCdsPositions_fivePrimeIncomplete()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
ColourSchemePropertyTest.testGetColourName()[pri:0, instance:jalview.schemes.ColourSchemePropertyTest@7ee55e70]
RangeElementsIteratorTest.testHasNextAndNextWithHidden()[pri:0, instance:jalview.datamodel.RangeElementsIteratorTest@3301500b]
SequenceFeaturesTest.testGetFeatureTypesForGroups()[pri:0, instance:jalview.datamodel.features.SequenceFeaturesTest@70f43b45]
SequenceFeaturesTest.testVarargsToTypes()[pri:0, instance:jalview.datamodel.features.SequenceFeaturesTest@70f43b45]
StringUtilsTest.testCompareVersions()[pri:0, instance:jalview.util.StringUtilsTest@632aa1a3]
UrlLinkTest.testUrlLinkCreationNoRegex()[pri:0, instance:jalview.util.UrlLinkTest@20765ed5]
OverviewDimensionsHideHiddenTest.testSetBoxFromViewportHiddenRowsAtStart()[pri:0, instance:jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2]
ScoreMatrixTest.testBuildSymbolIndex()[pri:0, instance:jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7]
MapListTest.testIsFromForwardStrand()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
EnsemblGeneTest.testGetTranscriptFeatures()[pri:0, instance:jalview.ext.ensembl.EnsemblGeneTest@7bfc3126]
ExonerateHelperTest.testProcessGffSimilarity_protein2dna_reverse_targetgff()[pri:0, instance:jalview.io.gff.ExonerateHelperTest@d71adc2]
SequenceTest.testIsProteinWithXorNAmbiguityCodes()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
AlignmentUtilsTests.testAlignSequenceAs_withTrailingPeptide()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
SparseCountTest.testKeyAt_ValueAt()[pri:0, instance:jalview.util.SparseCountTest@1af1347d]
MatrixTest.testTred_reproducible()[pri:0, instance:jalview.math.MatrixTest@59221b97]
MappingTest.testToString()[pri:0, instance:jalview.datamodel.MappingTest@323e8306]
ArrayUtilsTest.testReverseIntArray()[pri:0, instance:jalview.util.ArrayUtilsTest@25230246]
FeatureRendererTest.testFilterFeaturesForDisplay()[pri:0, instance:jalview.renderer.seqfeatures.FeatureRendererTest@2bffa76d]
SequenceTest.testCopyConstructor_noDataset()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
ChimeraCommandsTest.testSetAttribute()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
SparseMatrixTest.testTranspose()[pri:0, instance:jalview.math.SparseMatrixTest@5a772895]
EnsemblCdsTest.testGetGenomicRangesFromFeatures()[pri:0, instance:jalview.ext.ensembl.EnsemblCdsTest@22ee2d0]
SequenceOntologyLiteTest.testIsA_sequenceVariant()[pri:0, instance:jalview.io.gff.SequenceOntologyLiteTest@24528a25]
RnaTest.testIsOpeningParenthesis()[pri:0, instance:jalview.analysis.RnaTest@4d0402b]
GffHelperBaseTest.testParseAttributeMap()[pri:0, instance:jalview.io.gff.GffHelperBaseTest@1a1d3c1a]
PairwiseAlignmentPanelTest.testConstructor_withSelectionGroup()[pri:0, instance:jalview.gui.PairwiseAlignmentPanelTest@4201a617]
ViewportRangesTest.testSetViewportStartAndWidthWrapped()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
EditCommandTest.testReplace_withGaps()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
FeatureColourFinderTest.testFindFeatureColour_graduatedFeatureColour()[pri:0, instance:jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f]
HiddenColumnsTest.testAdjustForHiddenColumns()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
MappingUtilsTest.testMapColumnSelection_dnaToProtein()[pri:0, instance:jalview.util.MappingUtilsTest@54e81b21]
SequenceFeaturesTest.testGetFeaturesByOntology()[pri:0, instance:jalview.datamodel.features.SequenceFeaturesTest@70f43b45]
ArgsParserTest.testContains()[pri:0, instance:jalview.bin.ArgsParserTest@10b3df93]
HiddenColumnsTest.testHideColumns_BitSet_range()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
AlignedCodonTest.testEquals()[pri:0, instance:jalview.datamodel.AlignedCodonTest@51b01960]
FeatureStoreTest.testFindFeatures_nonNested()[pri:0, instance:jalview.datamodel.features.FeatureStoreTest@106faf11]
PlatformTest.testEscapeBackslashes()[pri:0, instance:jalview.util.PlatformTest@50cf5a23]
SequenceFeaturesTest.testGetPositionalFeatures()[pri:0, instance:jalview.datamodel.features.SequenceFeaturesTest@70f43b45]
JmolCommandsTest.testColourByCharge()[pri:0, instance:jalview.ext.jmol.JmolCommandsTest@3ef41c66]
MapListTest.testLocateInFrom_reverseStrand()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
MapListTest.testLocateInTo_withIntrons()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
HiddenSequencesTest.testAdjustHeightSequenceDeleted()[pri:0, instance:jalview.datamodel.HiddenSequencesTest@6754ef00]
HiddenSequencesTest.testHideShowSequence_withHiddenRepSequence()[pri:0, instance:jalview.datamodel.HiddenSequencesTest@6754ef00]
FinderTest.testFindAll_sequenceIds()[pri:0, instance:jalview.analysis.FinderTest@3a7b503d]
JSONFileTest.testSeqParsed()[pri:0, instance:jalview.io.JSONFileTest@54336c81]
FinderTest.testFindAll()[pri:0, instance:jalview.analysis.FinderTest@3a7b503d]
CodingUtilsTest.testEncodeCodon()[pri:0, instance:jalview.analysis.CodingUtilsTest@255990cc]
UniprotTest.testGetUniprotEntryDescription()[pri:0, instance:jalview.ws.dbsources.UniprotTest@30272916]
SequenceTest.testFindFeatures()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
EditCommandTest.testUndo_insertGap()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
EBIFetchClientTest.testBuildUrl()[pri:0, instance:jalview.ws.ebi.EBIFetchClientTest@5bf61e67]
EditCommandTest.testUndo_multipleInsertGaps()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
MatrixTest.testFindMinMax()[pri:0, instance:jalview.math.MatrixTest@59221b97]
PopupMenuTest.testConfigureReferenceAnnotationsMenu_notOnAlignment()[pri:0, instance:jalview.gui.PopupMenuTest@467f77a5]
MatrixTest.testReverseRange_maxToZero()[pri:0, instance:jalview.math.MatrixTest@59221b97]
ColumnSelectionTest.testGetSelectedRanges()[pri:0, instance:jalview.datamodel.ColumnSelectionTest@3ad394e6]
Mapping.mapFer1From3W5V()[pri:0, instance:jalview.structure.Mapping@7726e185]
MappingUtilsTest.testFindMappingsForSequenceAndOthers()[pri:0, instance:jalview.util.MappingUtilsTest@54e81b21]
TDBeaconsFTSRestClientTest.getDataColumnsFieldsAsCommaDelimitedString()[pri:0, instance:jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100]
SparseMatrixTest.testPostMultiply()[pri:0, instance:jalview.math.SparseMatrixTest@5a772895]
JvSwingUtilsTest.testWrapTooltip_multilineShortText()[pri:0, instance:jalview.gui.JvSwingUtilsTest@1e287667]
ConservationTest.testCalculate_noThreshold()[pri:0, instance:jalview.analysis.ConservationTest@51c929ae]
FinderTest.testFind_withHiddenColumnsAndSelection()[pri:0, instance:jalview.analysis.FinderTest@3a7b503d]
JalviewFileViewTest.testGetTypeDescription()[pri:0, instance:jalview.io.JalviewFileViewTest@62577d6]
Jalview2xmlTests.noDuplicatePdbMappingsMade()[pri:0, instance:jalview.project.Jalview2xmlTests@39fc6b2c]
MapListTest.testAddRange()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
FeatureColourTest.testGetColor_GraduatedByAttributeValue()[pri:0, instance:jalview.schemes.FeatureColourTest@7668d560]
PopupMenuTest.testConfigureReferenceAnnotationsMenu_alreadyAdded()[pri:0, instance:jalview.gui.PopupMenuTest@467f77a5]
FeatureMatcherTest.testIsByScore()[pri:0, instance:jalview.datamodel.features.FeatureMatcherTest@32c0915e]
ScoreMatrixTest.testGetPairwiseScore()[pri:0, instance:jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7]
PaintRefresherTest.testGetAssociatedPanels()[pri:0, instance:jalview.gui.PaintRefresherTest@2e6ee0bc]
PymolCommandsTest.testSetAttribute()[pri:0, instance:jalview.ext.pymol.PymolCommandsTest@5f577419]
CaseInsensitiveStringTest.testEquals()[pri:0, instance:jalview.util.CaseInsensitiveStringTest@4fdf8f12]
FTSRestClientTest.getPrimaryKeyColumIndexTest()[pri:0, instance:jalview.fts.core.FTSRestClientTest@11ee02f8]
JSONUtilsTest.testArrayToList()[pri:0, instance:jalview.util.JSONUtilsTest@315ba14a]
EmblFlatFileTest.testParse()[pri:0, instance:jalview.io.EmblFlatFileTest@5fd9b663]
JmolCommandsTest.testGetAtomSpec()[pri:0, instance:jalview.ext.jmol.JmolCommandsTest@3ef41c66]
ChimeraXCommandsTest.testStartNotifications()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569]
SeqPanelTest.testFindMousePosition_wrapped_scales_longSequence()[pri:0, instance:jalview.gui.SeqPanelTest@308a6984]
SequenceFeaturesTest.testDelete()[pri:0, instance:jalview.datamodel.features.SequenceFeaturesTest@70f43b45]
StockholmFileTest.secondaryStructureForRNASequence()[pri:0, instance:jalview.io.StockholmFileTest@51bde877]
GeneticCodesTest.testTranslate_nonStandardTableAmbiguityCodes()[pri:0, instance:jalview.analysis.GeneticCodesTest@751e664e]
QuickSortTest.testCharSortByFloat()[pri:0, instance:jalview.util.QuickSortTest@450794b4]
ViewportRangesTest.testGetAbsoluteAlignmentWidth()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
JalviewFileViewTest.testGetImageIcon()[pri:0, instance:jalview.io.JalviewFileViewTest@62577d6]
ViewportRangesTest.testGetWrappedMaxScroll()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
FeaturesFileTest.testPrintJalviewFormat_withFilters()[pri:0, instance:jalview.io.FeaturesFileTest@214894fc]
PopupMenuTest.testAddFeatureDetails()[pri:0, instance:jalview.gui.PopupMenuTest@467f77a5]
AlignmentTest.testSetHiddenColumns()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
SequenceTest.testDeleteChars_withGaps()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
DnaTest.testCompareCodonPos_isSymmetric()[pri:0, instance:jalview.analysis.DnaTest@29d2d081]
CodingUtilsTest.testDecodeCodon()[pri:0, instance:jalview.analysis.CodingUtilsTest@255990cc]
MatcherTest.testNumericMatch_nullOrInvalidValue()[pri:0, instance:jalview.util.matcher.MatcherTest@2899a8db]
AlignedCodonFrameTest.testGetMappedRegion_eitherWay()[pri:0, instance:jalview.datamodel.AlignedCodonFrameTest@7bd69e82]
MapListTest.testToString()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
ScoreMatrixTest.testConstructor_matrixTooSmall()[pri:0, instance:jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7]
PDBChainTest.testGetChargeColour()[pri:0, instance:mc_view.PDBChainTest@3c49fab6]
ScoreMatrixTest.testConstructor_matrixTooBig()[pri:0, instance:jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7]
AppletUrlProviderFactoryTest.testCreateUrlProvider()[pri:0, instance:jalview.urls.AppletUrlProviderFactoryTest@d4ab71a]
RangeElementsIteratorTest.testHasNextAndNextEndHidden()[pri:0, instance:jalview.datamodel.RangeElementsIteratorTest@3301500b]
FeatureColourTest.testGetColor_aboveBelowThreshold()[pri:0, instance:jalview.schemes.FeatureColourTest@7668d560]
JalviewLiteTest.testSeparatorListToArray()[pri:0, instance:jalview.bin.JalviewLiteTest@24855019]
MappingTypeTest.testGetToRatio()[pri:0, instance:jalview.datamodel.MappingTypeTest@a23a01d]
StringUtilsTest.testInsertCharAt()[pri:0, instance:jalview.util.StringUtilsTest@632aa1a3]
AlignmentUtilsTests.testAlignSequenceAs_mappedProteinProtein()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
FeatureRendererTest.testIsVisible()[pri:0, instance:jalview.renderer.seqfeatures.FeatureRendererTest@2bffa76d]
FeatureAttributesTest.testGetMinMax()[pri:0, instance:jalview.datamodel.features.FeatureAttributesTest@7692cd34]
SequenceTest.testFindPosition()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
PopupMenuTest.testBuildLinkMenu()[pri:0, instance:jalview.gui.PopupMenuTest@467f77a5]
RnaTest.testGetHelixMap_oneHelix()[pri:0, instance:jalview.analysis.RnaTest@4d0402b]
ScoreMatrixTest.testBlosum62_values()[pri:0, instance:jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7]
AlignmentUtilsTests.testAlignProteinAsDna()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
FeatureDistanceModelTest.testFindDistances()[pri:0, instance:jalview.analysis.scoremodels.FeatureDistanceModelTest@3153ddfc]
ScaleRendererTest.testCalculateMarks()[pri:0, instance:jalview.renderer.ScaleRendererTest@c0b41d6]
FeaturesFileTest.testParse_mixedJalviewGff()[pri:0, instance:jalview.io.FeaturesFileTest@214894fc]
JmolCommandsTest.testLoadFile()[pri:0, instance:jalview.ext.jmol.JmolCommandsTest@3ef41c66]
AlignFrameTest.testChangeColour_background_groupsAndThresholds()[pri:0, instance:jalview.gui.AlignFrameTest@f325091]
SequenceTest.testInsertCharAt()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
AtomSpecModelTest.testGetRanges()[pri:0, instance:jalview.structure.AtomSpecModelTest@9257031]
EditCommandTest.testAppendEdit_insertGap()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
OverviewDimensionsShowHiddenTest.testSetBoxFromViewportHiddenRowsAtStart()[pri:0, instance:jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620]
FeatureColourTest.testIsOutwithThreshold()[pri:0, instance:jalview.schemes.FeatureColourTest@7668d560]
SequenceOntologyTest.testIsCDS()[pri:0, instance:jalview.ext.so.SequenceOntologyTest@3f3c966c]
ClustalFileTest.testParse_withNumbering()[pri:0, instance:jalview.io.ClustalFileTest@85ec632]
DnaTest.testReverseSequence()[pri:0, instance:jalview.analysis.DnaTest@29d2d081]
MappingTypeTest.testGetFromRatio()[pri:0, instance:jalview.datamodel.MappingTypeTest@a23a01d]
DbRefFetcherTest.testStandardProtDbs()[pri:0, instance:jalview.ws.seqfetcher.DbRefFetcherTest@1162410a]
FormatTest.testRepeat()[pri:0, instance:jalview.util.FormatTest@4a67318f]
AnnotationChooserTest.testIsInActionScope_selectedScope()[pri:0, instance:jalview.gui.AnnotationChooserTest@63a5e46c]
EnsemblProteinTest.testIsValidReference()[pri:0, instance:jalview.ext.ensembl.EnsemblProteinTest@53bc1328]
MathUtilsTest.testGcd()[pri:0, instance:jalview.util.MathUtilsTest@38d5b107]
RotatableMatrixTest.testGetRotation()[pri:0, instance:jalview.math.RotatableMatrixTest@6ac4944a]
ColumnSelectionTest.testMarkColumns_extend()[pri:0, instance:jalview.datamodel.ColumnSelectionTest@3ad394e6]
MappingTypeTest.testGetInverse()[pri:0, instance:jalview.datamodel.MappingTypeTest@a23a01d]
AlignmentTest.testFindAnnotation_byCalcId()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
AlignmentUtilsTests.testAlignSequenceAs_withMapping_withUnmappedProtein()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
SequenceTest.testGetSequence()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
CacheTest.testVersionChecker()[pri:0, instance:jalview.bin.CacheTest@ea27e34]
AnnotatedPDBFileInputTest.checkNoDuplicates()[pri:0, instance:jalview.io.AnnotatedPDBFileInputTest@64b31700]
MapListTest.testAddOffsetPositions()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
MappingUtilsTest.testMapEditCommand()[pri:0, instance:jalview.util.MappingUtilsTest@54e81b21]
AnnotatedPDBFileInputTest.checkPDBSequenceFeatures()[pri:0, instance:jalview.io.AnnotatedPDBFileInputTest@64b31700]
PDBfileTest.testParse_withJmol_noAnnotations()[pri:0, instance:mc_view.PDBfileTest@515f4131]
AlignmentUtilsTests.testTranslatesAs()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
AlignViewportTest.testDeregisterMapping_withNoReference()[pri:0, instance:jalview.gui.AlignViewportTest@437e951d]
AtomTest.testStringConstructor()[pri:0, instance:mc_view.AtomTest@62e8f862]
RotatableMatrixTest.testPreMultiply()[pri:0, instance:jalview.math.RotatableMatrixTest@6ac4944a]
UniprotTest.testGetUniprotEntries()[pri:0, instance:jalview.ws.dbsources.UniprotTest@30272916]
SequenceTest.testGetAlignmentAnnotations_forCalcIdLabelAndDescription()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
ChimeraCommandsTest.testGetResidueAttributes()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
MapListTest.testLocateInTo_noIntrons()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
FeatureMatcherSetTest.testMatches_compoundKey()[pri:0, instance:jalview.datamodel.features.FeatureMatcherSetTest@33aa93c]
FeatureMatcherTest.testGetAttribute()[pri:0, instance:jalview.datamodel.features.FeatureMatcherTest@32c0915e]
HiddenColumnsTest.testBoundedIterator()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
AlignSeqTest.testIndexEncode_peptide()[pri:0, instance:jalview.analysis.AlignSeqTest@68ed96ca]
JvSwingUtilsTest.testGetScrollBarProportion()[pri:0, instance:jalview.gui.JvSwingUtilsTest@1e287667]
PDBfileTest.testParse_withJmolAddAlignmentAnnotations()[pri:0, instance:mc_view.PDBfileTest@515f4131]
ScoreMatrixFileTest.testParseMatrix_aaindex_tooFewColumns()[pri:0, instance:jalview.io.ScoreMatrixFileTest@3d829787]
ViewStyleTest.testEquals()[pri:0, instance:jalview.viewmodel.styles.ViewStyleTest@130a0f66]
Gff3HelperTest.testProcessCdnaMatch_reverseToForward()[pri:0, instance:jalview.io.gff.Gff3HelperTest@3add81c4]
RnaTest.testGetSimpleBPs()[pri:0, instance:jalview.analysis.RnaTest@4d0402b]
TCoffeeScoreFileTest.testWrongFile()[pri:0, instance:jalview.io.TCoffeeScoreFileTest@60b85ba1]
PDBfileTest.testParse_withAnnotations_noSS()[pri:0, instance:mc_view.PDBfileTest@515f4131]
TDBeaconsFTSRestClientTest.coverageForEqualsAndHashFunction()[pri:0, instance:jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100]
ParsePropertiesTest.testGetScoresFromDescription_twoScores()[pri:0, instance:jalview.analysis.ParsePropertiesTest@182b435b]
EditCommandTest.testPriorState_multipleInserts()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
HiddenColumnsTest.testFindColumnPosition()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
StockholmFileTest.fullWUSSsecondaryStructureForRNASequence()[pri:0, instance:jalview.io.StockholmFileTest@51bde877]
ConservationTest.testRecordConservation()[pri:0, instance:jalview.analysis.ConservationTest@51c929ae]
PDBEntryTest.testEquals()[pri:0, instance:jalview.datamodel.PDBEntryTest@7561db12]
EnsemblGenomeTest.testGetGenomicRangesFromFeatures()[pri:0, instance:jalview.ext.ensembl.EnsemblGenomeTest@3e792ce3]
MapListTest.testGetInverse()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
JSONFileTest.testGrpParsed_colourNone()[pri:0, instance:jalview.io.JSONFileTest@54336c81]
TCoffeeScoreFileTest.testHeightAndWidthWithResidueNumbers()[pri:0, instance:jalview.io.TCoffeeScoreFileTest@60b85ba1]
AlignmentUtilsTests.testShowOrHideSequenceAnnotations()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
PopupMenuTest.testConfigureReferenceAnnotationsMenu_twoViews()[pri:0, instance:jalview.gui.PopupMenuTest@467f77a5]
FeatureColourFinderTest.testFindFeatureColour_noFeatures()[pri:0, instance:jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f]
OverviewDimensionsShowHiddenTest.testSetBoxFromViewportHiddenRowsInMiddle()[pri:0, instance:jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620]
JvOptionPaneTest.showMessageDialogFamilyTest()[pri:0, instance:jalview.gui.JvOptionPaneTest@25243bc1]
RnaTest.testGetSimpleBPs_unmatchedCloser()[pri:0, instance:jalview.analysis.RnaTest@4d0402b]
FeaturesFileTest.testPrintGffFormat_withFilters()[pri:0, instance:jalview.io.FeaturesFileTest@214894fc]
AlignedCodonFrameTest.testGetMappedRegion()[pri:0, instance:jalview.datamodel.AlignedCodonFrameTest@7bd69e82]
AlignmentUtilsTests.testMapProteinAlignmentToCdna_withStartAndStopCodons()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
DnaTest.testReverseCdna()[pri:0, instance:jalview.analysis.DnaTest@29d2d081]
SparseMatrixTest.testTred_reproducible()[pri:0, instance:jalview.math.SparseMatrixTest@5a772895]
FeatureStoreTest.testMax()[pri:0, instance:jalview.datamodel.features.FeatureStoreTest@106faf11]
ResiduePropertiesTest.testGetResidues_nucleotide()[pri:0, instance:jalview.schemes.ResiduePropertiesTest@1e34c607]
UserColourSchemeTest.testConstructor_coloursArray()[pri:0, instance:jalview.schemes.UserColourSchemeTest@31198ceb]
FormatAdapterTest.testRoundTrip(jalview.io.FileFormatI)[pri:0, instance:jalview.io.FormatAdapterTest@79c4715d]
ChimeraXCommandsTest.testGetAtomSpec()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569]
ConservationTest.testCountConservationAndGaps()[pri:0, instance:jalview.analysis.ConservationTest@51c929ae]
FeatureMatcherTest.testToStableString()[pri:0, instance:jalview.datamodel.features.FeatureMatcherTest@32c0915e]
SequenceAnnotationReportTest.testAppendFeature_status()[pri:0, instance:jalview.io.SequenceAnnotationReportTest@71652c98]
Gff3HelperTest.testGetDescription()[pri:0, instance:jalview.io.gff.Gff3HelperTest@3add81c4]
MessageManagerTest.testFormatMessage_invalid()[pri:0, instance:jalview.util.MessageManagerTest@6650813a]
OverviewDimensionsShowHiddenTest.testFromMouseWithHiddenRowsInMiddle()[pri:0, instance:jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620]
FileFormatsTest.testGetFormats()[pri:0, instance:jalview.io.FileFormatsTest@10567255]
OverviewDimensionsHideHiddenTest.testSetBoxFromViewport()[pri:0, instance:jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2]
ViewportRangesTest.testPageUpDownWrapped()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
AlignmentTest.testDeleteSequenceByIndex()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
JmolParserTest.testParse_missingResidues()[pri:0, instance:jalview.ext.jmol.JmolParserTest@6b739528]
PymolCommandsTest.testOpenSession()[pri:0, instance:jalview.ext.pymol.PymolCommandsTest@5f577419]
MapListTest.testCoalesceRanges()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
FeatureStoreTest.testGetFeatureLength()[pri:0, instance:jalview.datamodel.features.FeatureStoreTest@106faf11]
SparseIntArrayTest.testPut()[pri:0, instance:jalview.ext.android.SparseIntArrayTest@10ad20cb]
StringUtilsTest.testUrlEncode()[pri:0, instance:jalview.util.StringUtilsTest@632aa1a3]
ScoreMatrixTest.testConstructor_gapDash()[pri:0, instance:jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7]
ViewportRangesTest.testSetStartResAndSeq()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
ResidueCountTest.testGetSymbolCounts_nucleotide()[pri:0, instance:jalview.datamodel.ResidueCountTest@24b52d3e]
StockholmFileTest.stockholmFileRnaSSAlphaChars()[pri:0, instance:jalview.io.StockholmFileTest@51bde877]
VisibleRowsIteratorTest.testRemove()[pri:0, instance:jalview.datamodel.VisibleRowsIteratorTest@27a0a5a2]
ResidueCountTest.testPut()[pri:0, instance:jalview.datamodel.ResidueCountTest@24b52d3e]
ChimeraCommandsTest.testGetSelectedResidues()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
DnaUtilsTest.testParseLocation()[pri:0, instance:jalview.util.DnaUtilsTest@5a6d5a8f]
AAStructureBindingModelTest.testBuildColoursMap()[pri:0, instance:jalview.structures.models.AAStructureBindingModelTest@3d9fc57a]
DBRefUtilsTest.testSearchRefs_noMapping()[pri:0, instance:jalview.util.DBRefUtilsTest@6979efad]
VisibleRowsIteratorTest.testLastNextEndHidden()[pri:0, instance:jalview.datamodel.VisibleRowsIteratorTest@27a0a5a2]
AlignedCodonFrameTest.testGetMappedCodons_dnaVariants()[pri:0, instance:jalview.datamodel.AlignedCodonFrameTest@7bd69e82]
AAStructureBindingModelTest.testFindSuperposableResidues()[pri:0, instance:jalview.structures.models.AAStructureBindingModelTest@3d9fc57a]
MappingUtilsTest.testGetLength()[pri:0, instance:jalview.util.MappingUtilsTest@54e81b21]
AlignFrameTest.testNewView_colourThresholds()[pri:0, instance:jalview.gui.AlignFrameTest@f325091]
FeatureColourFinderTest.testFindFeatureColour_nestedFeatures()[pri:0, instance:jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f]
OverviewDimensionsHideHiddenTest.testSetBoxFromViewportHiddenColsAtEnd()[pri:0, instance:jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2]
SequenceTest.testAddSequenceFeatures()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
SearchResultsTest.testHashcode()[pri:0, instance:jalview.datamodel.SearchResultsTest@15deb1dc]
PaintRefresherTest.testRemoveComponent()[pri:0, instance:jalview.gui.PaintRefresherTest@2e6ee0bc]
AlignmentTest.testGetWidth()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
MatrixTest.testPostMultiply()[pri:0, instance:jalview.math.MatrixTest@59221b97]
FeaturesFileTest.simpleGff3FileClass()[pri:0, instance:jalview.io.FeaturesFileTest@214894fc]
AlignmentUtilsTests.testAddMappedPositions_withStopCodon()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
QuickSortTest.testSort_byStringValues()[pri:0, instance:jalview.util.QuickSortTest@450794b4]
SequenceTest.testFindIndex_withCursor()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
SequenceTest.testDeriveSequence_existingDataset()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
JmolCommandsTest.testColourBySequence()[pri:0, instance:jalview.ext.jmol.JmolCommandsTest@3ef41c66]
SequenceFeaturesTest.testShiftFeatures()[pri:0, instance:jalview.datamodel.features.SequenceFeaturesTest@70f43b45]
ResidueCountTest.test_countNucleotide()[pri:0, instance:jalview.datamodel.ResidueCountTest@24b52d3e]
SearchResultsTest.testInvolvesSequence()[pri:0, instance:jalview.datamodel.SearchResultsTest@15deb1dc]
PymolCommandsTest.testGetAtomSpec()[pri:0, instance:jalview.ext.pymol.PymolCommandsTest@5f577419]
TrimRegionCommandTest.testTrimLeft_withUndoAndRedo()[pri:0, instance:jalview.commands.TrimRegionCommandTest@4ced35ed]
AAFrequencyTest.testCalculate_noProfile()[pri:0, instance:jalview.analysis.AAFrequencyTest@6e0ff644]
PaintRefresherTest.testRegister()[pri:0, instance:jalview.gui.PaintRefresherTest@2e6ee0bc]
AlignmentTest.testAssertDatasetIsNormalised()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
ChimeraCommandsTest.testCloseViewer()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
SequenceTest.testCopyConstructor_withDataset()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
SequenceTest.testDeleteChars()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
PopupMenuTest.testConfigureReferenceAnnotationsMenu_noSequenceSelected()[pri:0, instance:jalview.gui.PopupMenuTest@467f77a5]
ColourSchemesTest.testGetColourScheme()[pri:0, instance:jalview.schemes.ColourSchemesTest@3fcdcf]
FinderTest.testFindAll_caseSensitive()[pri:0, instance:jalview.analysis.FinderTest@3a7b503d]
FormatTest.testForm_float()[pri:0, instance:jalview.util.FormatTest@4a67318f]
PIDColourSchemeTest.testFindColour_ignoreGaps()[pri:0, instance:jalview.schemes.PIDColourSchemeTest@5c371e13]
AlignmentUtilsTests.testAlignAs_alternateTranscriptsUngapped()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
MappingUtilsTest.testMapSequenceGroup_columns()[pri:0, instance:jalview.util.MappingUtilsTest@54e81b21]
ResiduePropertiesTest.testCodonTranslate()[pri:0, instance:jalview.schemes.ResiduePropertiesTest@1e34c607]
ChimeraXCommandsTest.testShowBackbone()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569]
FeatureAttributesTest.testDatatype()[pri:0, instance:jalview.datamodel.features.FeatureAttributesTest@7692cd34]
FeatureStoreTest.testFindFeatures_contactFeatures()[pri:0, instance:jalview.datamodel.features.FeatureStoreTest@106faf11]
JvCacheableInputBoxTest.getUserInputTest()[pri:0, instance:jalview.io.cache.JvCacheableInputBoxTest@2fb68ec6]
OverviewDimensionsShowHiddenTest.testSetBoxFromViewportHiddenRowsAtEnd()[pri:0, instance:jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620]
AnnotatedPDBFileInputTest.checkAnnotationWiring()[pri:0, instance:jalview.io.AnnotatedPDBFileInputTest@64b31700]
EditCommandTest.testPriorState_removeGapsMultipleSeqs()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
OverviewResColourFinderTest.testGetResidueBoxColour_none()[pri:0, instance:jalview.renderer.OverviewResColourFinderTest@5d332969]
SequenceTest.testGetPrimaryDBRefs_peptide()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
PymolCommandsTest.testColourResidues()[pri:0, instance:jalview.ext.pymol.PymolCommandsTest@5f577419]
ScoreMatrixTest.testOutputMatrix_roundTrip()[pri:0, instance:jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7]
OverviewDimensionsShowHiddenTest.testFromMouseWithHiddenRowsAtStart()[pri:0, instance:jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620]
FeatureDistanceModelTest.testFindDistances_withParams()[pri:0, instance:jalview.analysis.scoremodels.FeatureDistanceModelTest@3153ddfc]
HiDPISettingTest1.testHiDPISettingInit()[pri:0, instance:jalview.bin.HiDPISettingTest1@1dfd5f51]
FileIOTester.testStarsInFasta2()[pri:0, instance:jalview.io.FileIOTester@e362c57]
FileIOTester.testStarsInFasta1()[pri:0, instance:jalview.io.FileIOTester@e362c57]
ScoreMatrixFileTest.testParseMatrix_ncbiBadGuideCharacter()[pri:0, instance:jalview.io.ScoreMatrixFileTest@3d829787]
SequenceTest.testIsProtein()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
ChimeraCommandsTest.testGetAtomSpec_alphaOnly()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
ChimeraCommandsTest.testOpenCommandFile()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
EnsemblCdsTest.testGetIdentifyingFeatures()[pri:0, instance:jalview.ext.ensembl.EnsemblCdsTest@22ee2d0]
DnaTest.testCompareCodonPos_oneOnly()[pri:0, instance:jalview.analysis.DnaTest@29d2d081]
JSONFileTest.testGrpParsed()[pri:0, instance:jalview.io.JSONFileTest@54336c81]
CaseInsensitiveStringTest.testHashcode()[pri:0, instance:jalview.util.CaseInsensitiveStringTest@4fdf8f12]
DnaTest.testCompareCodonPos()[pri:0, instance:jalview.analysis.DnaTest@29d2d081]
SeqPanelTest.testSetStatusReturnsNearestResiduePosition()[pri:0, instance:jalview.gui.SeqPanelTest@308a6984]
ScoreMatrixFileTest.testParseMatrix_ncbiBadDelimiter()[pri:0, instance:jalview.io.ScoreMatrixFileTest@3d829787]
SparseMatrixTest.testPreMultiply_tooFewColumns()[pri:0, instance:jalview.math.SparseMatrixTest@5a772895]
PymolCommandsTest.testLoadFile()[pri:0, instance:jalview.ext.pymol.PymolCommandsTest@5f577419]
FeatureSettingsTest.testGetColorTooltip()[pri:0, instance:jalview.gui.FeatureSettingsTest@4d4d48a6]
JSONFileTest.hiddenSeqsTest()[pri:0, instance:jalview.io.JSONFileTest@54336c81]
FeatureStoreTest.testShiftFeatures()[pri:0, instance:jalview.datamodel.features.FeatureStoreTest@106faf11]
PfamFormatInputTest.testPfamFormatValidLimits()[pri:0, instance:jalview.io.PfamFormatInputTest@5a12c728]
PymolCommandsTest.testSetAttributes()[pri:0, instance:jalview.ext.pymol.PymolCommandsTest@5f577419]
StructureChooserQuerySourceTest.buildPDBQueryTest()[pri:0, instance:jalview.gui.structurechooser.StructureChooserQuerySourceTest@3be8821f]
AnnotationChooserTest.testResetOriginalState()[pri:0, instance:jalview.gui.AnnotationChooserTest@63a5e46c]
SparseCountTest.testUnderflow()[pri:0, instance:jalview.util.SparseCountTest@1af1347d]
VisibleRowsIteratorTest.testLastNextWithHidden()[pri:0, instance:jalview.datamodel.VisibleRowsIteratorTest@27a0a5a2]
BackupFilesTest.backupsEnabledRollMaxTest()[pri:0, instance:jalview.io.BackupFilesTest@bae47a0]
Jalview2xmlTests.testStoreAndRecoverGeneLocus()[pri:0, instance:jalview.project.Jalview2xmlTests@39fc6b2c]
AlignmentUtilsTests.testAlignProteinAsDna_incompleteStartCodon()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
CommandLineOperations.testAllInputOperations(java.lang.String, java.lang.String)[pri:0, instance:jalview.bin.CommandLineOperations@33c2bd]
ComparisonTest.testIsNucleotide_sequences()[pri:0, instance:jalview.util.ComparisonTest@54f5f647]
FeatureStoreTest.testAddFeature()[pri:0, instance:jalview.datamodel.features.FeatureStoreTest@106faf11]
EditCommandTest.testUndo_deleteGap()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
AAFrequencyTest.testExtractCdnaProfile()[pri:0, instance:jalview.analysis.AAFrequencyTest@6e0ff644]
GffHelperBaseTest.testTrimMapping()[pri:0, instance:jalview.io.gff.GffHelperBaseTest@1a1d3c1a]
ChimeraCommandsTest.testColourByCharge()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
StringUtilsTest.testDeleteChars()[pri:0, instance:jalview.util.StringUtilsTest@632aa1a3]
UrlLinkDisplayTest.testUrl()[pri:0, instance:jalview.urls.UrlLinkDisplayTest@1ad777f]
ParsePropertiesTest.testGetScoresFromDescription_wordBoundaries()[pri:0, instance:jalview.analysis.ParsePropertiesTest@182b435b]
RangeElementsIteratorTest.testLastNextNoHidden()[pri:0, instance:jalview.datamodel.RangeElementsIteratorTest@3301500b]
StockholmFileTest.rfamFileIO()[pri:0, instance:jalview.io.StockholmFileTest@51bde877]
SequenceTest.testAddPDBId()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
AlignedCodonIteratorTest.testNext()[pri:0, instance:jalview.datamodel.AlignedCodonIteratorTest@74d7184a]
ColumnSelectionTest.testHideColumns_withSelection()[pri:0, instance:jalview.datamodel.ColumnSelectionTest@3ad394e6]
FeatureStoreTest.testFindFeatures_mixed()[pri:0, instance:jalview.datamodel.features.FeatureStoreTest@106faf11]
PDBEntryTest.testTypeMatches()[pri:0, instance:jalview.datamodel.PDBEntryTest@7561db12]
CrossRefTest.testFindXrefSourcesForSequence_proteinToDna()[pri:0, instance:jalview.analysis.CrossRefTest@3c8bdd5b]
ScoreMatrixFileTest.testParseMatrix_aaindex_tooManyRows()[pri:0, instance:jalview.io.ScoreMatrixFileTest@3d829787]
OverviewDimensionsShowHiddenTest.testSetBoxFromViewportHiddenColsAtStart()[pri:0, instance:jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620]
IdentifyFileTest.testLooksLikeFeatureData()[pri:0, instance:jalview.io.IdentifyFileTest@e27ba81]
AlignmentUtilsTests.testMapCdsToProtein()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
TestAlignSeq.testExtractGaps()[pri:0, instance:jalview.analysis.TestAlignSeq@3704122f]
ScoreMatrixFileTest.testParseMatrix_headerMissing()[pri:0, instance:jalview.io.ScoreMatrixFileTest@3d829787]
ScoreMatrixFileTest.testParseMatrix_ncbiBadFloat()[pri:0, instance:jalview.io.ScoreMatrixFileTest@3d829787]
AlignmentAnnotationTests.testAdjustForAlignment()[pri:0, instance:jalview.datamodel.AlignmentAnnotationTests@6831d8fd]
MapListTest.testCountPositions()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
AlignmentAnnotationUtilsTest.testGetShownHiddenTypes_withGraphGroups()[pri:0, instance:jalview.analysis.AlignmentAnnotationUtilsTest@6d1310f6]
ColorUtilsTest.testDarkerThan()[pri:0, instance:jalview.util.ColorUtilsTest@4a8b5227]
JmolCommandsTest.testShowBackbone()[pri:0, instance:jalview.ext.jmol.JmolCommandsTest@3ef41c66]
FTSRestClientTest.coverageForExceptionBranches()[pri:0, instance:jalview.fts.core.FTSRestClientTest@11ee02f8]
ScalePanelTest.testSelectColumns_withHidden()[pri:0, instance:jalview.gui.ScalePanelTest@420bc288]
FTSRestClientTest.getAllFTSDataColumns()[pri:0, instance:jalview.fts.core.FTSRestClientTest@11ee02f8]
StockholmFileTest.stockholmFileRnaSSSpaceChars()[pri:0, instance:jalview.io.StockholmFileTest@51bde877]
PymolCommandsTest.testShowBackbone()[pri:0, instance:jalview.ext.pymol.PymolCommandsTest@5f577419]
AlignmentPanelTest.testSetScrollValues()[pri:0, instance:jalview.gui.AlignmentPanelTest@77b325b3]
Jalview2xmlTests.testMergeDatasetsforManyViews()[pri:0, instance:jalview.project.Jalview2xmlTests@39fc6b2c]
FileIOTester.testGziplocalFileIO()[pri:0, instance:jalview.io.FileIOTester@e362c57]
HiddenSequencesTest.testGetFullAlignment()[pri:0, instance:jalview.datamodel.HiddenSequencesTest@6754ef00]
DesktopUrlProviderFactoryTest.testCreateUrlProvider()[pri:0, instance:jalview.urls.DesktopUrlProviderFactoryTest@1af05b03]
FeatureColourTest.testGetColor_Graduated()[pri:0, instance:jalview.schemes.FeatureColourTest@7668d560]
SequenceAnnotationReportTest.testAppendFeature_stripHtml()[pri:0, instance:jalview.io.SequenceAnnotationReportTest@71652c98]
StructureChooserTest.populateFilterComboBoxTest()[pri:0, instance:jalview.gui.StructureChooserTest@7a34b7b8]
FeatureStoreTest.testMin()[pri:0, instance:jalview.datamodel.features.FeatureStoreTest@106faf11]
SeqPanelTest.testFindColumn_unwrapped()[pri:0, instance:jalview.gui.SeqPanelTest@308a6984]
FeatureMatcherTest.testMatches_byAttribute()[pri:0, instance:jalview.datamodel.features.FeatureMatcherTest@32c0915e]
JmolViewerTest.testAddStrToSingleSeqViewJMol()[pri:0, instance:jalview.ext.jmol.JmolViewerTest@622ef26a]
PDBEntryTest.testGetType()[pri:0, instance:jalview.datamodel.PDBEntryTest@7561db12]
QuickSortTest.testCharSortByInt()[pri:0, instance:jalview.util.QuickSortTest@450794b4]
ViewportRangesTest.testScrollUpWithHidden()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
ProgressBarTest.testConstructor_wrongLayout()[pri:0, instance:jalview.gui.ProgressBarTest@1bb9aa43]
ChimeraXCommandsTest.testSetAttribute()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569]
GeneticCodesTest.testGetCodeTable()[pri:0, instance:jalview.analysis.GeneticCodesTest@751e664e]
GffTests.testResolveExonerateGff()[pri:0, instance:jalview.io.gff.GffTests@159e366]
SequenceDummyTest.testBecome()[pri:0, instance:jalview.datamodel.SequenceDummyTest@57a4d5ee]
PymolManagerTest.testGetPymolPaths()[pri:0, instance:jalview.ext.pymol.PymolManagerTest@28fa700e]
FeatureStoreTest.testGetTotalFeatureLength()[pri:0, instance:jalview.datamodel.features.FeatureStoreTest@106faf11]
FTSRestClientTest.getDataColumnGroupById()[pri:0, instance:jalview.fts.core.FTSRestClientTest@11ee02f8]
RnaTest.testGetHelixMap_twoHelices()[pri:0, instance:jalview.analysis.RnaTest@4d0402b]
TDBeaconsFTSRestClientTest.getColumnMinWidthTest()[pri:0, instance:jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100]
MapListTest.testConstructor_withLists()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
SequenceTest.testAddAlignmentAnnotation()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
AlignViewportTest.testHideRevealSequences()[pri:0, instance:jalview.gui.AlignViewportTest@437e951d]
OverviewDimensionsHideHiddenTest.testFromMouseWithHiddenColsAtStart()[pri:0, instance:jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2]
ViewportRangesTest.testScrollUp_wrapped()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
Jalview2xmlTests.testStoreAndRecoverColourThresholds()[pri:0, instance:jalview.project.Jalview2xmlTests@39fc6b2c]
AlignmentUtilsTests.testMapProteinAlignmentToCdna_noXrefs()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
SequenceFeaturesTest.testDeleteAll()[pri:0, instance:jalview.datamodel.features.SequenceFeaturesTest@70f43b45]
AnnotationColourGradientTest.testFindColour_belowThreshold()[pri:0, instance:jalview.schemes.AnnotationColourGradientTest@3b718392]
GenBankFileTest.testParse()[pri:0, instance:jalview.io.GenBankFileTest@5aa360ea]
EmblFlatFileTest.testParse_codonStartNot1()[pri:0, instance:jalview.io.EmblFlatFileTest@5fd9b663]
ColourSchemesTest.testGetColourSchemes()[pri:0, instance:jalview.schemes.ColourSchemesTest@3fcdcf]
PopupMenuTest.testConfigureReferenceAnnotationsMenu_noReferenceAnnotations()[pri:0, instance:jalview.gui.PopupMenuTest@467f77a5]
AlignViewportTest.testDeregisterMapping_onCloseView()[pri:0, instance:jalview.gui.AlignViewportTest@437e951d]
SearchResultsTest.testEquals_orderDiffers()[pri:0, instance:jalview.datamodel.SearchResultsTest@15deb1dc]
SequenceTest.testReplace()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
FeaturesFileTest.testParse()[pri:0, instance:jalview.io.FeaturesFileTest@214894fc]
ChimeraXCommandsTest.testSetAttributes()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569]
FileFormatsTest.testGetReadableFormats()[pri:0, instance:jalview.io.FileFormatsTest@10567255]
FeatureStoreTest.testGetFeatureGroups()[pri:0, instance:jalview.datamodel.features.FeatureStoreTest@106faf11]
AlignedCodonTest.testToString()[pri:0, instance:jalview.datamodel.AlignedCodonTest@51b01960]
MapListTest.testLocateInFrom_withOverlap()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
DnaTest.testTranslateCdna_simple()[pri:0, instance:jalview.analysis.DnaTest@29d2d081]
ResidueShaderTest.testApplyConservation()[pri:0, instance:jalview.renderer.ResidueShaderTest@2e27d72f]
AnnotatedPDBFileInputTest.testJalviewProjectRelocationAnnotation()[pri:0, instance:jalview.io.AnnotatedPDBFileInputTest@64b31700]
OverviewDimensionsHideHiddenTest.testSetBoxFromViewportHiddenColsInMiddle()[pri:0, instance:jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2]
EditCommandTest.testPriorState_singleInsert()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
SearchResultsTest.testAddResult()[pri:0, instance:jalview.datamodel.SearchResultsTest@15deb1dc]
ChimeraXCommandsTest.testListResidueAttributes()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569]
AnnotationChooserTest.testGetAnnotationTypes()[pri:0, instance:jalview.gui.AnnotationChooserTest@63a5e46c]
DBRefEntryTest.testIsPrimaryCandidate()[pri:0, instance:jalview.datamodel.DBRefEntryTest@42deb43a]
EnsemblCdnaTest.testRetainFeature()[pri:0, instance:jalview.ext.ensembl.EnsemblCdnaTest@2c282004]
ResidueColourSchemeTest.testIsApplicableTo()[pri:0, instance:jalview.schemes.ResidueColourSchemeTest@530a8454]
HiddenColumnsTest.testHideColumns_subsumingHidden()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
MapListTest.testGetPositionsForOffsets()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
FeatureStoreTest.testGetMinimumScore_getMaximumScore()[pri:0, instance:jalview.datamodel.features.FeatureStoreTest@106faf11]
HiddenColumnsTest.testHashCode()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
PlatformTest.testPathEquals()[pri:0, instance:jalview.util.PlatformTest@50cf5a23]
CacheTest.testSetDateProperty()[pri:0, instance:jalview.bin.CacheTest@ea27e34]
PDBEntryTest.testUpdateFrom()[pri:0, instance:jalview.datamodel.PDBEntryTest@7561db12]
MapListTest.testEquals()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
StringUtilsTest.testUrlDecode()[pri:0, instance:jalview.util.StringUtilsTest@632aa1a3]
AlignmentUtilsTests.testMapCdnaToProtein_forSubsequence()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
ExonerateHelperTest.testAddExonerateGffToAlignment()[pri:0, instance:jalview.io.gff.ExonerateHelperTest@d71adc2]
SequenceFeaturesTest.testGetTotalFeatureLength()[pri:0, instance:jalview.datamodel.features.SequenceFeaturesTest@70f43b45]
HiddenColumnsTest.testVisibleBlocksVisBoundsIterator()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
FileFormatsTest.testRegisterFileFormat()[pri:0, instance:jalview.io.FileFormatsTest@10567255]
ColorUtilsTest.testToTkCode()[pri:0, instance:jalview.util.ColorUtilsTest@4a8b5227]
ExonerateHelperTest.testProcessGffSimilarity_protein2dna_reverse_querygff()[pri:0, instance:jalview.io.gff.ExonerateHelperTest@d71adc2]
AnnotationSorterTest.testSort_timingPresorted()[pri:0, instance:jalview.analysis.AnnotationSorterTest@50b8ae8d]
GeneticCodesTest.testTranslate()[pri:0, instance:jalview.analysis.GeneticCodesTest@751e664e]
SequenceFeatureTest.testCopyConstructors()[pri:0, instance:jalview.datamodel.SequenceFeatureTest@5af5def9]
ViewportRangesTest.testSetViewportLocation()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
AlignViewportTest.testSetGlobalColourScheme()[pri:0, instance:jalview.gui.AlignViewportTest@437e951d]
SequenceGroupTest.testContains()[pri:0, instance:jalview.datamodel.SequenceGroupTest@3a45c42a]
ViewportRangesTest.testScrollToVisible()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
MappingUtilsTest.testFlattenRanges()[pri:0, instance:jalview.util.MappingUtilsTest@54e81b21]
PhylipFileTests.testSequentialIO()[pri:0, instance:jalview.io.PhylipFileTests@79ab3a71]
ViewportRangesTest.testSetStartRes()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
AlignmentAnnotationTests.testGetDefaultRnaHelixSymbol()[pri:0, instance:jalview.datamodel.AlignmentAnnotationTests@6831d8fd]
ViewportRangesTest.testSetStartEndRes()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
AnnotationChooserTest.testDeselectType_hideForAll()[pri:0, instance:jalview.gui.AnnotationChooserTest@63a5e46c]
ScoreMatrixTest.testcomputeSimilarity_matchShortestSequence()[pri:0, instance:jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7]
UniprotTest.testGetUniprotEntryId()[pri:0, instance:jalview.ws.dbsources.UniprotTest@30272916]
AlignViewportTest.testSetGetHasSearchResults()[pri:0, instance:jalview.gui.AlignViewportTest@437e951d]
AnnotationChooserTest.testDeselectType_showForSelected()[pri:0, instance:jalview.gui.AnnotationChooserTest@63a5e46c]
TCoffeeScoreFileTest.testParse()[pri:0, instance:jalview.io.TCoffeeScoreFileTest@60b85ba1]
TrimRegionCommandTest.testTrimRight_withUndoAndRedo()[pri:0, instance:jalview.commands.TrimRegionCommandTest@4ced35ed]
ResidueColourFinderTest.testGetResidueColour_zappo()[pri:0, instance:jalview.renderer.ResidueColourFinderTest@7cc9ce8]
VisibleRowsIteratorTest.testHasNextAndNextEndHidden()[pri:0, instance:jalview.datamodel.VisibleRowsIteratorTest@27a0a5a2]
MappingUtilsTest.testBuildSearchResults()[pri:0, instance:jalview.util.MappingUtilsTest@54e81b21]
SequenceTest.testFindPositions()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
AlignmentUtilsTests.testTransferGeneLoci()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
AnnotationSorterTest.testNoSort_autocalcFirst()[pri:0, instance:jalview.analysis.AnnotationSorterTest@50b8ae8d]
ColumnSelectionTest.testAddElement()[pri:0, instance:jalview.datamodel.ColumnSelectionTest@3ad394e6]
AlignmentViewTest.testGetVisibleAlignmentGapChar()[pri:0, instance:jalview.datamodel.AlignmentViewTest@6b85300e]
ResidueColourSchemeTest.testIsApplicableTo_dynamicColourScheme()[pri:0, instance:jalview.schemes.ResidueColourSchemeTest@530a8454]
ChimeraCommandsTest.testSuperposeStructures()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
HiddenSequencesTest.testHideShowLastSequences()[pri:0, instance:jalview.datamodel.HiddenSequencesTest@6754ef00]
JalviewColourSchemeTest.testToString()[pri:0, instance:jalview.schemes.JalviewColourSchemeTest@6c44052e]
TDBeaconsFTSRestClientTest.getPrimaryKeyColumn()[pri:0, instance:jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100]
OverviewDimensionsShowHiddenTest.testFromMouseWithHiddenRowsAtStartWrapped()[pri:0, instance:jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620]
MatchTest.testToString()[pri:0, instance:jalview.datamodel.MatchTest@4acf72b6]
PDBChainTest.testMakeExactMapping()[pri:0, instance:mc_view.PDBChainTest@3c49fab6]
AlignmentTest.testFindGroup()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
AlignmentTest.testGetVisibleWidth()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
HydrophobicColourSchemeTest.testFindColour()[pri:0, instance:jalview.schemes.HydrophobicColourSchemeTest@126be319]
HiddenColumnsCursorTest.testConstructor()[pri:0, instance:jalview.datamodel.HiddenColumnsCursorTest@1deb2c43]
EmblXmlSourceTest.testGetCdsRanges()[pri:0, instance:jalview.ws.dbsources.EmblXmlSourceTest@2237bada]
ScoreMatrixFileTest.testParse_ncbiFormat()[pri:0, instance:jalview.io.ScoreMatrixFileTest@3d829787]
StringUtilsTest.testStripHtmlTags()[pri:0, instance:jalview.util.StringUtilsTest@632aa1a3]
SequenceTest.testGetCharAt()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
FeatureColourFinderTest.testFindFeatureColour_transparencyTwoFeatures()[pri:0, instance:jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f]
AlignmentUtilsTests.testTransferFeatures_withOmit()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
AlignmentTest.testCreateDatasetAlignment()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
EnsemblSeqProxyTest.testReverseComplementAllele()[pri:0, instance:jalview.ext.ensembl.EnsemblSeqProxyTest@3c1e3314]
MapListTest.testAddMapList()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
ScoreMatrixTest.testGetMaximumScore()[pri:0, instance:jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7]
QuickSortTest.testSort_byDoubleValues()[pri:0, instance:jalview.util.QuickSortTest@450794b4]
AlignViewControllerTest.testFindColumnsWithFeature()[pri:0, instance:jalview.controller.AlignViewControllerTest@2c22a348]
MatrixTest.testConstructor()[pri:0, instance:jalview.math.MatrixTest@59221b97]
ChimeraXCommandsTest.testStopNotifications()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569]
UrlProviderTest.testInitUrlProvider()[pri:0, instance:jalview.urls.UrlProviderTest@438bad7c]
AAStructureBindingModelTest.testImportPDBPreservesChainMappings()[pri:0, instance:jalview.structures.models.AAStructureBindingModelTest@3d9fc57a]
AlignmentAnnotationTests.testCopyConstructor()[pri:0, instance:jalview.datamodel.AlignmentAnnotationTests@6831d8fd]
AlignmentTest.testAlignAs_proteinAsCdna()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
FileIOTester.testIsGzipInputStream()[pri:0, instance:jalview.io.FileIOTester@e362c57]
SequenceFeaturesTest.testGetMinimumScore_getMaximumScore()[pri:0, instance:jalview.datamodel.features.SequenceFeaturesTest@70f43b45]
EnsemblCdsTest.testRetainFeature()[pri:0, instance:jalview.ext.ensembl.EnsemblCdsTest@22ee2d0]
FTSRestClientTest.getColumnMinWidthTest()[pri:0, instance:jalview.fts.core.FTSRestClientTest@11ee02f8]
UrlLinkDisplayTest.getValue()[pri:0, instance:jalview.urls.UrlLinkDisplayTest@1ad777f]
FeatureMatcherSetTest.testGetMatchers()[pri:0, instance:jalview.datamodel.features.FeatureMatcherSetTest@33aa93c]
GeneticCodesTest.testTranslate_standardTableAmbiguityCodes()[pri:0, instance:jalview.analysis.GeneticCodesTest@751e664e]
SequenceTest.testFindPosition_withCursorAndEdits()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
HiddenColumnsTest.testGetSize()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
SeqCigarTest.testSomething()[pri:0, instance:jalview.datamodel.SeqCigarTest@6e9c413e]
VisibleRowsIteratorTest.testLastNextNoHidden()[pri:0, instance:jalview.datamodel.VisibleRowsIteratorTest@27a0a5a2]
MappingUtilsTest.testFlattenRanges_reverseStrand()[pri:0, instance:jalview.util.MappingUtilsTest@54e81b21]
ComparisonTest.testIsSameResidue()[pri:0, instance:jalview.util.ComparisonTest@54f5f647]
EditCommandTest.testCut_withFeatures()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
ArgsParserTest.testGetValue()[pri:0, instance:jalview.bin.ArgsParserTest@10b3df93]
FeatureColourTest.testGetDescription()[pri:0, instance:jalview.schemes.FeatureColourTest@7668d560]
FinderTest.testFind_findAllInSelectionWithShortSequence()[pri:0, instance:jalview.analysis.FinderTest@3a7b503d]
Jalview2xmlTests.testStoreAndRecoverReferenceSeqSettings()[pri:0, instance:jalview.project.Jalview2xmlTests@39fc6b2c]
SequenceTest.testSetDatasetSequence_toSelf()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
UrlLinkDisplayTest.testIsEditable()[pri:0, instance:jalview.urls.UrlLinkDisplayTest@1ad777f]
HiddenColumnsTest.testGetVisibleStartAndEndIndex()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
OverviewDimensionsShowHiddenTest.testConstructor()[pri:0, instance:jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620]
PDBChainTest.testMakeResidueList_noAnnotation()[pri:0, instance:mc_view.PDBChainTest@3c49fab6]
RNAMLfileTest.testRnamlToStockholmIO()[pri:0, instance:jalview.io.RNAMLfileTest@6e5bfdfc]
PopupMenuTest.testBuildAnnotationTypesMenus_hideDisabled()[pri:0, instance:jalview.gui.PopupMenuTest@467f77a5]
SeqPanelTest.testGetEditStatusMessage_lockedEditing()[pri:0, instance:jalview.gui.SeqPanelTest@308a6984]
SearchResultsTest.testEquals_distinctSequences()[pri:0, instance:jalview.datamodel.SearchResultsTest@15deb1dc]
EmblFlatFileTest.testRemoveQuotes()[pri:0, instance:jalview.io.EmblFlatFileTest@5fd9b663]
DBRefUtilsTest.testGetCanonicalName()[pri:0, instance:jalview.util.DBRefUtilsTest@6979efad]
RnaTest.testGetMatchingOpeningParenthesis()[pri:0, instance:jalview.analysis.RnaTest@4d0402b]
SparseIntArrayTest.testAdd()[pri:0, instance:jalview.ext.android.SparseIntArrayTest@10ad20cb]
AlignedCodonIteratorTest.testNext_withOffset()[pri:0, instance:jalview.datamodel.AlignedCodonIteratorTest@74d7184a]
StructureChooserTest.sanitizeSeqNameTest()[pri:0, instance:jalview.gui.StructureChooserTest@7a34b7b8]
AAFrequencyTest.testExtractCdnaProfile_countGaps()[pri:0, instance:jalview.analysis.AAFrequencyTest@6e0ff644]
ViewportRangesTest.testPageUpDown()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
AlignmentTest.testDeleteHiddenSequence()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
SequenceFeaturesTest.testGetNonPositionalFeatures()[pri:0, instance:jalview.datamodel.features.SequenceFeaturesTest@70f43b45]
AnnotationSorterTest.testSortBySequenceAndType_autocalcLast()[pri:0, instance:jalview.analysis.AnnotationSorterTest@50b8ae8d]
HiddenColumnsTest.testVisibleContigsIterator()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
Jalview2xmlTests.viewRefPdbAnnotation()[pri:0, instance:jalview.project.Jalview2xmlTests@39fc6b2c]
GeneticCodesTest.testTranslateCanonical()[pri:0, instance:jalview.analysis.GeneticCodesTest@751e664e]
TDBeaconsFTSRestClientTest.getDefaultResponsePageSize()[pri:0, instance:jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100]
BondTest.testTranslate()[pri:0, instance:mc_view.BondTest@26f3d90c]
FTSRestClientTest.getSearchableDataColumns()[pri:0, instance:jalview.fts.core.FTSRestClientTest@11ee02f8]
EnsemblCdnaTest.testGetGenomicRangesFromFeatures_reverseStrand()[pri:0, instance:jalview.ext.ensembl.EnsemblCdnaTest@2c282004]
ColumnSelectionTest.testStretchGroup_shrink()[pri:0, instance:jalview.datamodel.ColumnSelectionTest@3ad394e6]
AlignmentTest.testAppend()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
RestClientTest.testGetRestClient()[pri:0, instance:jalview.ws.rest.RestClientTest@51671b08]
AlignmentViewTest.testGetVisibleContigs()[pri:0, instance:jalview.datamodel.AlignmentViewTest@6b85300e]
AAFrequencyTest.testCompleteConsensus_ignoreGaps_noLogo()[pri:0, instance:jalview.analysis.AAFrequencyTest@6e0ff644]
AlignmentTest.testAddSequencePreserveDatasetIntegrity()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
EnsemblCdnaTest.testGetIdentifyingFeatures()[pri:0, instance:jalview.ext.ensembl.EnsemblCdnaTest@2c282004]
SequenceAnnotationReportTest.testAppendFeature_noScore()[pri:0, instance:jalview.io.SequenceAnnotationReportTest@71652c98]
OverviewDimensionsShowHiddenTest.testSetBoxFromMouseClick()[pri:0, instance:jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620]
StockholmFileTest.pfamFileDataExtraction()[pri:0, instance:jalview.io.StockholmFileTest@51bde877]
FinderTest.testFind_residueNumber()[pri:0, instance:jalview.analysis.FinderTest@3a7b503d]
RnaTest.testGetRNASecStrucState()[pri:0, instance:jalview.analysis.RnaTest@4d0402b]
StockholmFileTest.pfamFileIO()[pri:0, instance:jalview.io.StockholmFileTest@51bde877]
JvOptionPaneTest.showInternalMessageDialogFamilyTest()[pri:0, instance:jalview.gui.JvOptionPaneTest@25243bc1]
VCFLoaderTest.testLoadVCFContig()[pri:0, instance:jalview.io.vcf.VCFLoaderTest@17ae98d7]
StructureChooserTest.displayTDBQueryTest()[pri:0, instance:jalview.gui.StructureChooserTest@7a34b7b8]
HiddenColumnsTest.testHasManyHiddenColumns()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
UrlLinkDisplayTest.testDisplayColumnNames()[pri:0, instance:jalview.urls.UrlLinkDisplayTest@1ad777f]
JSONFileTest.roundTripTest()[pri:0, instance:jalview.io.JSONFileTest@54336c81]
SearchResultsTest.testEquals()[pri:0, instance:jalview.datamodel.SearchResultsTest@15deb1dc]
SequenceFeatureTest.testGetDetailsReport()[pri:0, instance:jalview.datamodel.SequenceFeatureTest@5af5def9]
FeaturesFileTest.testOutputFeatureFilters()[pri:0, instance:jalview.io.FeaturesFileTest@214894fc]
JmolParserTest.testLocalPDBId()[pri:0, instance:jalview.ext.jmol.JmolParserTest@6b739528]
SparseMatrixTest.testPreMultiply_sparseProduct()[pri:0, instance:jalview.math.SparseMatrixTest@5a772895]
AlignedCodonFrameTest.testGetMappedCodons()[pri:0, instance:jalview.datamodel.AlignedCodonFrameTest@7bd69e82]
ChimeraCommandsTest.testSaveSession()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
ResidueCountTest.test_unexpectedPeptide()[pri:0, instance:jalview.datamodel.ResidueCountTest@24b52d3e]
ScoreMatrixFileTest.testParseMatrix_ncbiTooManyRows()[pri:0, instance:jalview.io.ScoreMatrixFileTest@3d829787]
PIDModelTest.testComputePID_matchShortestSequence()[pri:0, instance:jalview.analysis.scoremodels.PIDModelTest@60afd40d]
SequenceTest.testGetPrimaryDBRefs_nucleotide()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
StrandColourSchemeTest.testFindColour()[pri:0, instance:jalview.schemes.StrandColourSchemeTest@5215cd9a]
PlatformTest.testIsControlDown_notMac()[pri:0, instance:jalview.util.PlatformTest@50cf5a23]
MatcherTest.testMatches_pattern()[pri:0, instance:jalview.util.matcher.MatcherTest@2899a8db]
RnaTest.testIsClosingParenthesis()[pri:0, instance:jalview.analysis.RnaTest@4d0402b]
FinderTest.testFind_withHiddenColumns()[pri:0, instance:jalview.analysis.FinderTest@3a7b503d]
FeatureMatcherSetTest.testToString()[pri:0, instance:jalview.datamodel.features.FeatureMatcherSetTest@33aa93c]
StructureChooserQuerySourceTest.cascadingThreeDBandPDBQuerys(jalview.datamodel.SequenceI)[pri:0, instance:jalview.gui.structurechooser.StructureChooserQuerySourceTest@3be8821f]
JmolCommandsTest.testOpenSession()[pri:0, instance:jalview.ext.jmol.JmolCommandsTest@3ef41c66]
TestAlignSeq.testPrintAlignment()[pri:0, instance:jalview.analysis.TestAlignSeq@3704122f]
VisibleContigsIteratorTest.testMultipleVisibleRegions()[pri:0, instance:jalview.datamodel.VisibleContigsIteratorTest@33d05366]
SequenceFeaturesTest.testGetFeatureCount()[pri:0, instance:jalview.datamodel.features.SequenceFeaturesTest@70f43b45]
TDBeaconsFTSRestClientTest.getColumnClassTest()[pri:0, instance:jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100]
AlignmentTest.testFindAnnotations_bySeqLabelandorCalcId()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
AnnotationChooserTest.testBuildActionButtonsPanel()[pri:0, instance:jalview.gui.AnnotationChooserTest@63a5e46c]
Jalview2xmlTests.testCopyViewSettings()[pri:0, instance:jalview.project.Jalview2xmlTests@39fc6b2c]
SequenceAnnotationReportTest.testAppendFeature_DescEqualsType()[pri:0, instance:jalview.io.SequenceAnnotationReportTest@71652c98]
FeatureColourTest.testToJalviewFormat()[pri:0, instance:jalview.schemes.FeatureColourTest@7668d560]
QuickSortTest.testSortByString()[pri:0, instance:jalview.util.QuickSortTest@450794b4]
CalculationChooserTest.testGetApplicableScoreModels()[pri:0, instance:jalview.gui.CalculationChooserTest@51abf713]
HiddenColumnsTest.testCopyConstructor()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
FeatureMatcherSetTest.testOr()[pri:0, instance:jalview.datamodel.features.FeatureMatcherSetTest@33aa93c]
ViewportRangesTest.testScrollRightWithHidden()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
FeatureStoreTest.testIsEmpty()[pri:0, instance:jalview.datamodel.features.FeatureStoreTest@106faf11]
GffHelperFactoryTest.testGetHelper()[pri:0, instance:jalview.io.gff.GffHelperFactoryTest@1c65121]
ShiftListTest.testParseMap()[pri:0, instance:jalview.util.ShiftListTest@30457e14]
FileFormatsTest.testIsIdentifiable()[pri:0, instance:jalview.io.FileFormatsTest@10567255]
EditCommandTest.testAddEdit_groupInsertGaps()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
OverviewDimensionsShowHiddenTest.testFromMouseWithHiddenColsInMiddle()[pri:0, instance:jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620]
SparseMatrixTest.testPreMultiply_tooManyColumns()[pri:0, instance:jalview.math.SparseMatrixTest@5a772895]
CrossRefTest.testFindXrefSequences_noDbrefs()[pri:0, instance:jalview.analysis.CrossRefTest@3c8bdd5b]
FeatureColourFinderTest.testFindFeatureColour_singleFeatureAtPosition()[pri:0, instance:jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f]
HiddenSequencesTest.testGetWidth()[pri:0, instance:jalview.datamodel.HiddenSequencesTest@6754ef00]
PymolCommandsTest.testColourBySequence()[pri:0, instance:jalview.ext.pymol.PymolCommandsTest@5f577419]
TDBeaconsFTSRestClientTest.getDataColumnByNameOrCode()[pri:0, instance:jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100]
SequenceFeatureTest.testGetStrand()[pri:0, instance:jalview.datamodel.SequenceFeatureTest@5af5def9]
RangeElementsIteratorTest.testRemove()[pri:0, instance:jalview.datamodel.RangeElementsIteratorTest@3301500b]
ScoreMatrixTest.testConstructor_matrixNotSquare()[pri:0, instance:jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7]
PopupMenuTest.testBuildAnnotationTypesMenus()[pri:0, instance:jalview.gui.PopupMenuTest@467f77a5]
ResidueCountTest.testAddGap()[pri:0, instance:jalview.datamodel.ResidueCountTest@24b52d3e]
JvCacheableInputBoxTest.updateCacheTest()[pri:0, instance:jalview.io.cache.JvCacheableInputBoxTest@2fb68ec6]
SequenceTest.testCreateDatasetSequence()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
UrlLinkTableModelTest.testDeletable()[pri:0, instance:jalview.urls.UrlLinkTableModelTest@5bbbdd4b]
ExonerateHelperTest.testProcessGffSimilarity_protein2dna_forward_querygff()[pri:0, instance:jalview.io.gff.ExonerateHelperTest@d71adc2]
JalviewFileViewTest.testGetExtension()[pri:0, instance:jalview.io.JalviewFileViewTest@62577d6]
FinderTest.testFind_ignoreHiddenColumns()[pri:0, instance:jalview.analysis.FinderTest@3a7b503d]
PDBEntryTest.testSetChainCode()[pri:0, instance:jalview.datamodel.PDBEntryTest@7561db12]
TestHtsContigDb.testCreateFastaSequenceIndex()[pri:0, instance:jalview.ext.htsjdk.TestHtsContigDb@54a3ab8f]
AppCacheTest.appCacheLimitTest()[pri:0, instance:jalview.io.cache.AppCacheTest@117632cf]
HiddenColumnsTest.testIsVisible()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
AnnotationFileIOTest.exampleAnnotationFileIO()[pri:0, instance:jalview.io.AnnotationFileIOTest@3b65e559]
PIDModelTest.testComputePID_matchesComparisonPID()[pri:0, instance:jalview.analysis.scoremodels.PIDModelTest@60afd40d]
AnnotationChooserTest.testBuildApplyToOptionsPanel_withSelectionGroup()[pri:0, instance:jalview.gui.AnnotationChooserTest@63a5e46c]
MappingUtilsTest.testMapSequenceGroup_sequences()[pri:0, instance:jalview.util.MappingUtilsTest@54e81b21]
EnsemblCdnaTest.testGetGenomicRangesFromFeatures()[pri:0, instance:jalview.ext.ensembl.EnsemblCdnaTest@2c282004]
Mapping.compareTransferredToRefPDBAnnot()[pri:0, instance:jalview.structure.Mapping@7726e185]
Jalview2xmlTests.testTCoffeeScores()[pri:0, instance:jalview.project.Jalview2xmlTests@39fc6b2c]
MapListTest.testLocateInFrom_noIntrons()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
ResiduePropertiesTest.testCodonTranslate_ambiguityCodes()[pri:0, instance:jalview.schemes.ResiduePropertiesTest@1e34c607]
BackupFilesTest.backupsEnabledSingleFileBackupTest()[pri:0, instance:jalview.io.BackupFilesTest@bae47a0]
FinderTest.testFindAll_maximalResultOnly()[pri:0, instance:jalview.analysis.FinderTest@3a7b503d]
ScoreMatrixFileTest.testParseMatrix_ncbiHeaderRepeated()[pri:0, instance:jalview.io.ScoreMatrixFileTest@3d829787]
ScoreMatrixFileTest.testParseMatrix_aaindex_rowColMismatch()[pri:0, instance:jalview.io.ScoreMatrixFileTest@3d829787]
BioJsHTMLOutputTest.getBioJsMSAVersions()[pri:0, instance:jalview.io.BioJsHTMLOutputTest@74a9c4b0]
EBIFetchClientTest.testParseIds()[pri:0, instance:jalview.ws.ebi.EBIFetchClientTest@5bf61e67]
JSONFileTest.testBioJSONRoundTripWithColourSchemeNone()[pri:0, instance:jalview.io.JSONFileTest@54336c81]
SequenceAnnotationReportTest.testAppendFeature_withScore()[pri:0, instance:jalview.io.SequenceAnnotationReportTest@71652c98]
FeatureMatcherSetTest.testAnd()[pri:0, instance:jalview.datamodel.features.FeatureMatcherSetTest@33aa93c]
AlignmentTest.testCreateDatasetAlignmentWithMappedToSeqs()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
HiddenSequencesTest.testGetHiddenSequence()[pri:0, instance:jalview.datamodel.HiddenSequencesTest@6754ef00]
OverviewDimensionsShowHiddenTest.testPositionInBox()[pri:0, instance:jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620]
AnnotationColourGradientTest.testShadeCalculation_belowThreshold()[pri:0, instance:jalview.schemes.AnnotationColourGradientTest@3b718392]
WindowsFileLoadAndSaveTest.loadAndSaveAlignment()[pri:0, instance:jalview.io.WindowsFileLoadAndSaveTest@492fc69e]
UrlLinkTableModelTest.testValues()[pri:0, instance:jalview.urls.UrlLinkTableModelTest@5bbbdd4b]
ChimeraXCommandsTest.testGetResidueSpec()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569]
AlignmentAnnotationUtilsTest.testGetShownHiddenTypes_noSequenceSelected()[pri:0, instance:jalview.analysis.AlignmentAnnotationUtilsTest@6d1310f6]
UrlLinkTest.testCreateLinksFromSequence()[pri:0, instance:jalview.util.UrlLinkTest@20765ed5]
AnnotationChooserTest.testBuildShowHidePanel()[pri:0, instance:jalview.gui.AnnotationChooserTest@63a5e46c]
MapListTest.testTraverseToPosition()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
ResidueCountTest.testToString()[pri:0, instance:jalview.datamodel.ResidueCountTest@24b52d3e]
AlignmentUtilsTests.testMapProteinAlignmentToCdna_prioritiseXrefs()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
PopupMenuTest.testHideInsertions()[pri:0, instance:jalview.gui.PopupMenuTest@467f77a5]
SeqPanelTest.testFindMousePosition_wrapped_annotations()[pri:0, instance:jalview.gui.SeqPanelTest@308a6984]
SequenceTest.testGetStartGetEnd()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
DnaTest.testTranslateCdna_withUntranslatableCodonsAndHiddenColumns()[pri:0, instance:jalview.analysis.DnaTest@29d2d081]
SequenceAnnotationReportTest.testAppendFeature_withScoreStatusAttribute()[pri:0, instance:jalview.io.SequenceAnnotationReportTest@71652c98]
AtomTest.testStringConstructor_malformed()[pri:0, instance:mc_view.AtomTest@62e8f862]
MappingUtilsTest.testBuildSearchResults_withIntron()[pri:0, instance:jalview.util.MappingUtilsTest@54e81b21]
SequenceFeaturesTest.testGetContactFeatures()[pri:0, instance:jalview.datamodel.features.SequenceFeaturesTest@70f43b45]
ChimeraXCommandsTest.testGetModelStartNo()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569]
AlignedCodonFrameTest.testMarkMappedRegion()[pri:0, instance:jalview.datamodel.AlignedCodonFrameTest@7bd69e82]
HiddenSequencesTest.testIsHidden()[pri:0, instance:jalview.datamodel.HiddenSequencesTest@6754ef00]
AlignFrameTest.testColourThresholdActions()[pri:0, instance:jalview.gui.AlignFrameTest@f325091]
PDBChainTest.testMakeCaBondList_nucleotide()[pri:0, instance:mc_view.PDBChainTest@3c49fab6]
AlignmentUtilsTests.testHasCrossRef()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
ChimeraCommandsTest.testGetModelStartNo()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
MappingUtilsTest.testFindMappingsForSequence()[pri:0, instance:jalview.util.MappingUtilsTest@54e81b21]
ParseHtmlBodyAndLinksTest.testParseHtml_withLinks()[pri:0, instance:jalview.util.ParseHtmlBodyAndLinksTest@44ea608c]
ColumnSelectionTest.testEquals()[pri:0, instance:jalview.datamodel.ColumnSelectionTest@3ad394e6]
ColorUtilsTest.testBleachColour()[pri:0, instance:jalview.util.ColorUtilsTest@4a8b5227]
ColumnSelectionTest.testMarkColumns_invert()[pri:0, instance:jalview.datamodel.ColumnSelectionTest@3ad394e6]
SequenceGroupTest.testGetColourScheme()[pri:0, instance:jalview.datamodel.SequenceGroupTest@3a45c42a]
StockholmFileTest.curlyWUSSsecondaryStructureForRNASequence()[pri:0, instance:jalview.io.StockholmFileTest@51bde877]
EnsemblXrefTest.testGetCrossReferences()[pri:0, instance:jalview.ext.ensembl.EnsemblXrefTest@4b770e40]
JvSwingUtilsTest.testWrapTooltip_longText()[pri:0, instance:jalview.gui.JvSwingUtilsTest@1e287667]
PopupMenuTest.testBuildAnnotationTypesMenus_showDisabled()[pri:0, instance:jalview.gui.PopupMenuTest@467f77a5]
ScoreMatrixFileTest.testParseMatrix_ncbiMixedDelimiters()[pri:0, instance:jalview.io.ScoreMatrixFileTest@3d829787]
EnsemblGeneTest.testGetGenomicRangesFromFeatures()[pri:0, instance:jalview.ext.ensembl.EnsemblGeneTest@7bfc3126]
ResidueCountTest.testOverflow()[pri:0, instance:jalview.datamodel.ResidueCountTest@24b52d3e]
JSONFileTest.testAnnotationParsed()[pri:0, instance:jalview.io.JSONFileTest@54336c81]
RangeElementsIteratorTest.testLastNextWithHidden()[pri:0, instance:jalview.datamodel.RangeElementsIteratorTest@3301500b]
PDBFTSRestClientTest.getPDBIdColumIndexTest()[pri:0, instance:jalview.fts.service.pdb.PDBFTSRestClientTest@61a5b4ae]
ChimeraCommandsTest.testSetBackgroundColour()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
FTSRestClientTest.coverageForMiscellaneousBranches()[pri:0, instance:jalview.fts.core.FTSRestClientTest@11ee02f8]
IdentifyFileTest.testIdentify(java.lang.String, jalview.io.FileFormatI)[pri:0, instance:jalview.io.IdentifyFileTest@e27ba81]
ParseHtmlBodyAndLinksTest.testParseHtml_noLinks()[pri:0, instance:jalview.util.ParseHtmlBodyAndLinksTest@44ea608c]
SequenceTest.testGapBitset()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
UrlLinkDisplayTest.testGetSetValue()[pri:0, instance:jalview.urls.UrlLinkDisplayTest@1ad777f]
ResidueShaderTest.testFindColour_gapColour()[pri:0, instance:jalview.renderer.ResidueShaderTest@2e27d72f]
JmolParserTest.testFileParser()[pri:0, instance:jalview.ext.jmol.JmolParserTest@6b739528]
AnnotationColourGradientTest.testFindColour_noThreshold()[pri:0, instance:jalview.schemes.AnnotationColourGradientTest@3b718392]
FeaturesFileTest.testPrintGffFormat()[pri:0, instance:jalview.io.FeaturesFileTest@214894fc]
AlignSeqTest.testIndexEncode_nucleotide()[pri:0, instance:jalview.analysis.AlignSeqTest@68ed96ca]
FTSRestClientTest.getDataColumnsFieldsAsCommaDelimitedString()[pri:0, instance:jalview.fts.core.FTSRestClientTest@11ee02f8]
AlignedCodonFrameTest.testGetMappedCodons_forSubSequences()[pri:0, instance:jalview.datamodel.AlignedCodonFrameTest@7bd69e82]
MatcherTest.testEquals()[pri:0, instance:jalview.util.matcher.MatcherTest@2899a8db]
QuickSortTest.testSort_byIntValues()[pri:0, instance:jalview.util.QuickSortTest@450794b4]
SequenceIdMatcherTest.test_seqIdNameEquals()[pri:0, instance:jalview.analysis.SequenceIdMatcherTest@7577b641]
AlignViewportTest.testShowOrDontShowOccupancy()[pri:0, instance:jalview.gui.AlignViewportTest@437e951d]
AlignmentUtilsTests.testAlignSequenceAs_withMapping_withIntrons()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
MapListTest.testConstructor()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
MapListTest.testAddMapList_sameMap()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
MapListTest.testGetMappedOffsetsForPositions()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
SequenceFeatureTest.testGetValue()[pri:0, instance:jalview.datamodel.SequenceFeatureTest@5af5def9]
Gff3HelperTest.testProcessCdnaMatch_forwardToForward()[pri:0, instance:jalview.io.gff.Gff3HelperTest@3add81c4]
SeqCanvasTest.testCalculateWrappedGeometry_withAnnotations()[pri:0, instance:jalview.gui.SeqCanvasTest@df5f5c0]
AnnotationColumnChooserTest.testReset()[pri:0, instance:jalview.gui.AnnotationColumnChooserTest@7e8e8651]
ChimeraCommandsTest.testFocusView()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
JmolParserTest.testSetSecondaryStructure()[pri:0, instance:jalview.ext.jmol.JmolParserTest@6b739528]
AnnotationSorterTest.testSortByTypeAndSequence_autocalcLast()[pri:0, instance:jalview.analysis.AnnotationSorterTest@50b8ae8d]
PDBChainTest.testSetChainColours_colour()[pri:0, instance:mc_view.PDBChainTest@3c49fab6]
ClustalxColourSchemeTest.testFindColour()[pri:0, instance:jalview.schemes.ClustalxColourSchemeTest@49bf29c6]
FileIOTester.testNonGziplocalFileIO()[pri:0, instance:jalview.io.FileIOTester@e362c57]
MappingUtilsTest.testRangeContains()[pri:0, instance:jalview.util.MappingUtilsTest@54e81b21]
AlignmentTest.testAlignAs_cdnaAsProtein_singleSequence()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
FeatureStoreTest.testDelete()[pri:0, instance:jalview.datamodel.features.FeatureStoreTest@106faf11]
ResidueShaderTest.testAboveThreshold()[pri:0, instance:jalview.renderer.ResidueShaderTest@2e27d72f]
EditCommandTest.testPriorState_singleDelete()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
HelixColourSchemeTest.testFindColour()[pri:0, instance:jalview.schemes.HelixColourSchemeTest@46292372]
StockholmFileTest.dbrefOutput()[pri:0, instance:jalview.io.StockholmFileTest@51bde877]
RnaTest.testIsCanonicalPair()[pri:0, instance:jalview.analysis.RnaTest@4d0402b]
SequenceFeatureTest.testGetDetailsReport_virtualFeature()[pri:0, instance:jalview.datamodel.SequenceFeatureTest@5af5def9]
SequenceTest.testSetName()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
Jalview2xmlTests.gatherViewsHere()[pri:0, instance:jalview.project.Jalview2xmlTests@39fc6b2c]
AlignedCodonFrameTest.testGetCoveringCodonMapping()[pri:0, instance:jalview.datamodel.AlignedCodonFrameTest@7bd69e82]
MappingUtilsTest.testFindOverlap()[pri:0, instance:jalview.util.MappingUtilsTest@54e81b21]
QuickSortTest.testSort_charSortByInt_mostlyZeroValues()[pri:0, instance:jalview.util.QuickSortTest@450794b4]
UrlLinkTest.testLinksWithTargets()[pri:0, instance:jalview.util.UrlLinkTest@20765ed5]
EnsemblSeqProxyTest.testReverseComplementAlleles()[pri:0, instance:jalview.ext.ensembl.EnsemblSeqProxyTest@3c1e3314]
FeatureColourFinderTest.testFindFeatureColour_gapPosition()[pri:0, instance:jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f]
AlignmentSorterTest.testSortByFeature_density()[pri:0, instance:jalview.analysis.AlignmentSorterTest@3228d990]
UrlLinkTableModelTest.testColumns()[pri:0, instance:jalview.urls.UrlLinkTableModelTest@5bbbdd4b]
AlignmentTest.testPadGaps()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
SeqCanvasTest.testClear_HighlightAndSelection()[pri:0, instance:jalview.gui.SeqCanvasTest@df5f5c0]
ScoreMatrixTest.testEqualsAndHashCode()[pri:0, instance:jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7]
EditCommandTest.testPriorState_singleInsertWithOffset()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
CommandLineOperations.reportCurrentWorkingDirectory()[pri:0, instance:jalview.bin.CommandLineOperations@33c2bd]
OverviewDimensionsShowHiddenTest.testFromMouseWithHiddenColsAtEnd()[pri:0, instance:jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620]
PDBChainTest.testMakeCaBondList()[pri:0, instance:mc_view.PDBChainTest@3c49fab6]
Gff3HelperTest.testProcessCdnaMatch_spliced()[pri:0, instance:jalview.io.gff.Gff3HelperTest@3add81c4]
AnnotationColourGradientTest.testFindColour_originalColours()[pri:0, instance:jalview.schemes.AnnotationColourGradientTest@3b718392]
ComparisonTest.testIsGap()[pri:0, instance:jalview.util.ComparisonTest@54f5f647]
ColumnSelectionTest.testFilterAnnotations()[pri:0, instance:jalview.datamodel.ColumnSelectionTest@3ad394e6]
AlignmentUtilsTests.testIsMappable()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
RnaTest.testIsRnaSecondaryStructureSymbol()[pri:0, instance:jalview.analysis.RnaTest@4d0402b]
AppCacheTest.appCacheTest()[pri:0, instance:jalview.io.cache.AppCacheTest@117632cf]
ScoreMatrixTest.testcomputeSimilarity_matchLongestSequence()[pri:0, instance:jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7]
CustomUrlProviderTest.testUrlLinks()[pri:0, instance:jalview.urls.CustomUrlProviderTest@3b4ef7]
ScoreMatrixTest.testSymmetric()[pri:0, instance:jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7]
SequenceFeaturesTest.testGetFeatureTypes_byOntology()[pri:0, instance:jalview.datamodel.features.SequenceFeaturesTest@70f43b45]
FeatureAttributesTest.testGetDescription()[pri:0, instance:jalview.datamodel.features.FeatureAttributesTest@7692cd34]
FeatureSettingsTest.testSaveLoad()[pri:0, instance:jalview.gui.FeatureSettingsTest@4d4d48a6]
AlignmentAnnotationUtilsTest.testGetVisibleGraphGroups()[pri:0, instance:jalview.analysis.AlignmentAnnotationUtilsTest@6d1310f6]
FeatureColourTest.testGetColor_colourByLabel()[pri:0, instance:jalview.schemes.FeatureColourTest@7668d560]
FeatureStoreTest.testContains()[pri:0, instance:jalview.datamodel.features.FeatureStoreTest@106faf11]
JmolCommandsTest.testGetModelStartNo()[pri:0, instance:jalview.ext.jmol.JmolCommandsTest@3ef41c66]
PymolCommandsTest.testGetModelStartNo()[pri:0, instance:jalview.ext.pymol.PymolCommandsTest@5f577419]
FeatureColourTest.testConstructors()[pri:0, instance:jalview.schemes.FeatureColourTest@7668d560]
HiddenColumnsTest.testIterator()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
PymolCommandsTest.testGetResidueSpec()[pri:0, instance:jalview.ext.pymol.PymolCommandsTest@5f577419]
JvSwingUtilsTest.testGetScrollValueForProportion()[pri:0, instance:jalview.gui.JvSwingUtilsTest@1e287667]
DBRefUtilsTest.testParseToDbRef()[pri:0, instance:jalview.util.DBRefUtilsTest@6979efad]
FeatureMatcherSetTest.testFromString()[pri:0, instance:jalview.datamodel.features.FeatureMatcherSetTest@33aa93c]
StructureChooserQuerySourceTest.sanitizeSeqNameTest()[pri:0, instance:jalview.gui.structurechooser.StructureChooserQuerySourceTest@3be8821f]
OverviewDimensionsHideHiddenTest.testFromMouseWithHiddenRowsAtEnd()[pri:0, instance:jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2]
MappingUtilsTest.testMapColumnSelection_null()[pri:0, instance:jalview.util.MappingUtilsTest@54e81b21]
SequenceGroupTest.testAddOrRemove()[pri:0, instance:jalview.datamodel.SequenceGroupTest@3a45c42a]
RangeElementsIteratorTest.testLastNextEndHidden()[pri:0, instance:jalview.datamodel.RangeElementsIteratorTest@3301500b]
ParseHtmlBodyAndLinksTest.testParseHtml_withLinksWithEncoding()[pri:0, instance:jalview.util.ParseHtmlBodyAndLinksTest@44ea608c]
FTSRestClientTest.getAllDefaulDisplayedDataColumns()[pri:0, instance:jalview.fts.core.FTSRestClientTest@11ee02f8]
OverviewDimensionsHideHiddenTest.testDragging()[pri:0, instance:jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2]
StructureMappingTest.testGetPDBResNumRanges()[pri:0, instance:jalview.structure.StructureMappingTest@282308c3]
FTSRestClientTest.coverageForEqualsAndHashFunction()[pri:0, instance:jalview.fts.core.FTSRestClientTest@11ee02f8]
OverviewDimensionsShowHiddenTest.testFromMouseWithHiddenRowsAtEnd()[pri:0, instance:jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620]
AlignmentAnnotationUtilsTest.testAsList()[pri:0, instance:jalview.analysis.AlignmentAnnotationUtilsTest@6d1310f6]
FileFormatsTest.testDeregisterFileFormat()[pri:0, instance:jalview.io.FileFormatsTest@10567255]
OverviewDimensionsShowHiddenTest.testDragging()[pri:0, instance:jalview.viewmodel.OverviewDimensionsShowHiddenTest@c1a4620]
BioJsHTMLOutputTest.expectedNullPointerException()[pri:0, instance:jalview.io.BioJsHTMLOutputTest@74a9c4b0]
ViewportRangesTest.testScrollToWrappedVisible()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
DnaTest.testConvertCodon()[pri:0, instance:jalview.analysis.DnaTest@29d2d081]
HiddenColumnsTest.testBoundedStartIterator()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
MappingUtilsTest.testMapColumnSelection_proteinToDna()[pri:0, instance:jalview.util.MappingUtilsTest@54e81b21]
EditCommandTest.testReplaceFirstResiduesWithGaps()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
BackupFilesTest.backupsEnabledNoRollMaxTest()[pri:0, instance:jalview.io.BackupFilesTest@bae47a0]
PDBFTSPanelTest.testDecodeSearchTerm()[pri:0, instance:jalview.fts.service.pdb.PDBFTSPanelTest@4102b1b1]
FeatureColourTest.testParseJalviewFeatureColour()[pri:0, instance:jalview.schemes.FeatureColourTest@7668d560]
AlignedCodonFrameTest.testCouldReplaceSequence()[pri:0, instance:jalview.datamodel.AlignedCodonFrameTest@7bd69e82]
ChimeraCommandsTest.testStartNotifications()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
ViewStyleTest.testCopyConstructor()[pri:0, instance:jalview.viewmodel.styles.ViewStyleTest@130a0f66]
ChimeraXCommandsTest.testSuperposeStructures()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569]
FTSRestClientTest.getColumnPreferredWidthTest()[pri:0, instance:jalview.fts.core.FTSRestClientTest@11ee02f8]
Jalview2xmlTests.testPcaViewAssociation()[pri:0, instance:jalview.project.Jalview2xmlTests@39fc6b2c]
TestHtsContigDb.testGetSequenceProxy_indexed()[pri:0, instance:jalview.ext.htsjdk.TestHtsContigDb@54a3ab8f]
FeatureMatcherTest.testFromString()[pri:0, instance:jalview.datamodel.features.FeatureMatcherTest@32c0915e]
PlatformTest.testIsControlDown_mac()[pri:0, instance:jalview.util.PlatformTest@50cf5a23]
StringUtilsTest.testParseInt()[pri:0, instance:jalview.util.StringUtilsTest@632aa1a3]
HiddenColumnsTest.testGetNextHiddenBoundary_Right()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
PDBfileTest.testParse()[pri:0, instance:mc_view.PDBfileTest@515f4131]
PfamSeedTest.testGetURL()[pri:0, instance:jalview.ws.dbsources.PfamSeedTest@5710768a]
ChimeraCommandsTest.testMakeAttributeName()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
AlignFrameTest.testHideFeatureColumns()[pri:0, instance:jalview.gui.AlignFrameTest@f325091]
AlignmentUtilsTests.testExpandContext()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
TrimRegionCommandTest.testTrimRight_oneColumn()[pri:0, instance:jalview.commands.TrimRegionCommandTest@4ced35ed]
AlignedCodonFrameTest.testAddMap()[pri:0, instance:jalview.datamodel.AlignedCodonFrameTest@7bd69e82]
OverviewDimensionsHideHiddenTest.testFromMouseWithHiddenColsAtEnd()[pri:0, instance:jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2]
EnsemblCdnaTest.testGetGenomicRangesFromFeatures_mixedStrand()[pri:0, instance:jalview.ext.ensembl.EnsemblCdnaTest@2c282004]
PymolCommandsTest.testSaveSession()[pri:0, instance:jalview.ext.pymol.PymolCommandsTest@5f577419]
SequenceTest.testGetAnnotation()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
AlignedCodonFrameTest.testGetCoveringMapping()[pri:0, instance:jalview.datamodel.AlignedCodonFrameTest@7bd69e82]
OverviewResColourFinderTest.testGetResidueBoxColour_userdef()[pri:0, instance:jalview.renderer.OverviewResColourFinderTest@5d332969]
AlignmentUtilsTests.testFindCdsPositions()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
SequenceTest.testFindIndex()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
JmolCommandsTest.testSaveSession()[pri:0, instance:jalview.ext.jmol.JmolCommandsTest@3ef41c66]
AnnotationColourGradientTest.testShadeCalculation_noThreshold()[pri:0, instance:jalview.schemes.AnnotationColourGradientTest@3b718392]
UniprotTest.testGetDescription()[pri:0, instance:jalview.ws.dbsources.UniprotTest@30272916]
ChimeraCommandsTest.testColourBySequence()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
ChimeraCommandsTest.testStopNotifications()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
ColumnSelectionTest.testRemoveElement()[pri:0, instance:jalview.datamodel.ColumnSelectionTest@3ad394e6]
AllColsIteratorTest.testRemove()[pri:0, instance:jalview.datamodel.AllColsIteratorTest@5cbf9e9f]
ChimeraXCommandsTest.testColourBySequence()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569]
Log4jTest.testLog4j()[pri:0, instance:jalview.util.Log4jTest@17f9344b]
AlignmentPanelTest.testUpdateLayout_endRes()[pri:0, instance:jalview.gui.AlignmentPanelTest@77b325b3]
JSONFileTest.colorSchemeTest()[pri:0, instance:jalview.io.JSONFileTest@54336c81]
ScoreMatrixTest.testOutputMatrix_html()[pri:0, instance:jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7]
SequenceFeaturesTest.testGetFeatureTypes()[pri:0, instance:jalview.datamodel.features.SequenceFeaturesTest@70f43b45]
ColourMenuHelperTest.testAddMenuItems_nucleotide()[pri:0, instance:jalview.gui.ColourMenuHelperTest@eadb475]
VisibleRowsIteratorTest.testHasNextAndNextStartHidden()[pri:0, instance:jalview.datamodel.VisibleRowsIteratorTest@27a0a5a2]
VisibleRowsIteratorTest.testLastNextStartHidden()[pri:0, instance:jalview.datamodel.VisibleRowsIteratorTest@27a0a5a2]
FeatureColourFinderTest.testFindFeatureColour_graduatedWithThreshold()[pri:0, instance:jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f]
HiddenColumnsTest.testEquals()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
SequenceFeaturesTest.testGetFeatureGroups()[pri:0, instance:jalview.datamodel.features.SequenceFeaturesTest@70f43b45]
SparseMatrixTest.testConstructor()[pri:0, instance:jalview.math.SparseMatrixTest@5a772895]
AnnotationPanelTest.testGetRowIndex()[pri:0, instance:jalview.gui.AnnotationPanelTest@271f18d3]
FeatureColourFinderTest.testFindFeatureColour_singleFeatureNotAtPosition()[pri:0, instance:jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f]
FeatureStoreTest.testGetPositionalFeatures()[pri:0, instance:jalview.datamodel.features.FeatureStoreTest@106faf11]
DBRefUtilsTest.testSelectRefs()[pri:0, instance:jalview.util.DBRefUtilsTest@6979efad]
ColumnSelectionTest.testMaxColumnSelection()[pri:0, instance:jalview.datamodel.ColumnSelectionTest@3ad394e6]
ResidueCountTest.testGetResiduesForCount()[pri:0, instance:jalview.datamodel.ResidueCountTest@24b52d3e]
AnnotationSorterTest.testSortByTypeAndSequence_autocalcFirst()[pri:0, instance:jalview.analysis.AnnotationSorterTest@50b8ae8d]
ResiduePropertiesTest.testPhysicoChemicalProperties()[pri:0, instance:jalview.schemes.ResiduePropertiesTest@1e34c607]
TDBeaconsFTSRestClientTest.getDataColumnGroupById()[pri:0, instance:jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100]
FileFormatsTest.testGetWritableFormats()[pri:0, instance:jalview.io.FileFormatsTest@10567255]
AlignmentSorterTest.testSortByFeature_score()[pri:0, instance:jalview.analysis.AlignmentSorterTest@3228d990]
MatrixTest.testFindMinMax_timing()[pri:0, instance:jalview.math.MatrixTest@59221b97]
ScoreMatrixTest.testGetMinimumScore()[pri:0, instance:jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7]
AnnotationChooserTest.testDeselectType_hideForSelected()[pri:0, instance:jalview.gui.AnnotationChooserTest@63a5e46c]
Jalview2xmlTests.testRNAStructureRecovery()[pri:0, instance:jalview.project.Jalview2xmlTests@39fc6b2c]
ScoreMatrixFileTest.testParseMatrix_aaIndexBlosum80()[pri:0, instance:jalview.io.ScoreMatrixFileTest@3d829787]
ColumnSelectionTest.testMarkColumns()[pri:0, instance:jalview.datamodel.ColumnSelectionTest@3ad394e6]
StartRegionIteratorTest.testBoundsIteratorUsingCursor()[pri:0, instance:jalview.datamodel.StartRegionIteratorTest@47a64f7d]
MappingUtilsTest.testRemoveEndPositions()[pri:0, instance:jalview.util.MappingUtilsTest@54e81b21]
ResiduePropertiesTest.testGetCanonicalAminoAcid()[pri:0, instance:jalview.schemes.ResiduePropertiesTest@1e34c607]
DBRefUtilsTest.testParseToDbRef_PDB()[pri:0, instance:jalview.util.DBRefUtilsTest@6979efad]
HiddenColumnsCursorTest.testFindRegionForColumn()[pri:0, instance:jalview.datamodel.HiddenColumnsCursorTest@1deb2c43]
AllRowsIteratorTest.testHasNextAndNext()[pri:0, instance:jalview.datamodel.AllRowsIteratorTest@18e8473e]
EditCommandTest.testAddEdit_multipleDeleteGap()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
MappedFeaturesTest.testFindProteinVariants()[pri:0, instance:jalview.datamodel.MappedFeaturesTest@619bd14c]
SequenceFeaturesTest.testGetAllFeatures()[pri:0, instance:jalview.datamodel.features.SequenceFeaturesTest@70f43b45]
FinderTest.testFind_findAll()[pri:0, instance:jalview.analysis.FinderTest@3a7b503d]
SequenceRendererTest.testGetResidueColour_WithGroup()[pri:0, instance:jalview.gui.SequenceRendererTest@66b72664]
StructureChooserQuerySourceTest.buildThreeDBQueryTest()[pri:0, instance:jalview.gui.structurechooser.StructureChooserQuerySourceTest@3be8821f]
AnnotationSorterTest.testSortBySequenceAndType_autocalcFirst()[pri:0, instance:jalview.analysis.AnnotationSorterTest@50b8ae8d]
ChimeraXCommandsTest.testSaveSession()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569]
CrossRefTest.testFindXrefSequences_indirectDbrefToProtein()[pri:0, instance:jalview.analysis.CrossRefTest@3c8bdd5b]
EnsemblGeneTest.testGetFeatureColourScheme()[pri:0, instance:jalview.ext.ensembl.EnsemblGeneTest@7bfc3126]
FeatureMatcherTest.testMatches_byLabel()[pri:0, instance:jalview.datamodel.features.FeatureMatcherTest@32c0915e]
StructureChooserTest.fetchStructuresInfoMockedTest()[pri:0, instance:jalview.gui.StructureChooserTest@7a34b7b8]
AlignmentAnnotationTests.testIsQuantitative()[pri:0, instance:jalview.datamodel.AlignmentAnnotationTests@6831d8fd]
JmolCommandsTest.testSuperposeStructures()[pri:0, instance:jalview.ext.jmol.JmolCommandsTest@3ef41c66]
AnnotationChooserTest.testSelectType_showForSelected()[pri:0, instance:jalview.gui.AnnotationChooserTest@63a5e46c]
ColourMenuHelperTest.testAddMenuItems_simpleOnly()[pri:0, instance:jalview.gui.ColourMenuHelperTest@eadb475]
FeatureMatcherTest.testMatches_byScore()[pri:0, instance:jalview.datamodel.features.FeatureMatcherTest@32c0915e]
MatrixTest.testMultiply()[pri:0, instance:jalview.math.MatrixTest@59221b97]
TDBeaconsFTSRestClientTest.getPrimaryKeyColumIndexTest()[pri:0, instance:jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100]
AlignmentTest.testCreateDataset_updateDbrefMappings()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
EditCommandTest.testCut_withFeatures5prime()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
UrlLinkTest.testLinkComparator()[pri:0, instance:jalview.util.UrlLinkTest@20765ed5]
AlignmentUtilsTests.testMapProteinAlignmentToCdna_withXrefs()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
JmolParserTest.testAlignmentLoader()[pri:0, instance:jalview.ext.jmol.JmolParserTest@6b739528]
AtomTest.testStringConstructor_blankOccupancyTempFactor()[pri:0, instance:mc_view.AtomTest@62e8f862]
PfamFullTest.testGetURL()[pri:0, instance:jalview.ws.dbsources.PfamFullTest@77e2a6e2]
ScoreMatrixFileTest.testParseMatrix_aaindex_extraDataLines()[pri:0, instance:jalview.io.ScoreMatrixFileTest@3d829787]
EmblXmlSourceTest.testGetEmblEntries()[pri:0, instance:jalview.ws.dbsources.EmblXmlSourceTest@2237bada]
GeneticCodesTest.testTranslate_standardTable()[pri:0, instance:jalview.analysis.GeneticCodesTest@751e664e]
SparseShortArrayTest.testAdd()[pri:0, instance:jalview.ext.android.SparseShortArrayTest@7dd712e8]
SequenceTest.testLocateVisibleStartofSequence()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
MessageManagerTest.testGetStringOrReturn()[pri:0, instance:jalview.util.MessageManagerTest@6650813a]
Jalview2xmlTests.testIsVersionStringLaterThan()[pri:0, instance:jalview.project.Jalview2xmlTests@39fc6b2c]
FeatureStoreTest.testDelete_readd()[pri:0, instance:jalview.datamodel.features.FeatureStoreTest@106faf11]
SeqPanelTest.testFindMousePosition_wrapped_noAnnotations()[pri:0, instance:jalview.gui.SeqPanelTest@308a6984]
StockholmFileTest.detectWussBrackets()[pri:0, instance:jalview.io.StockholmFileTest@51bde877]
AlignmentTest.testPropagateInsertionsOverlap()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
FormatTest.testFormat_scientific()[pri:0, instance:jalview.util.FormatTest@4a67318f]
StructureMappingTest.testEquals()[pri:0, instance:jalview.structure.StructureMappingTest@282308c3]
AlignedCodonIteratorTest.testAnother()[pri:0, instance:jalview.datamodel.AlignedCodonIteratorTest@74d7184a]
ColumnSelectionTest.testMarkColumns_toggle()[pri:0, instance:jalview.datamodel.ColumnSelectionTest@3ad394e6]
ViewportRangesTest.testSetViewportWidth()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
PymolCommandsTest.testSetBackgroundColour()[pri:0, instance:jalview.ext.pymol.PymolCommandsTest@5f577419]
ViewportRangesTest.testSetViewportHeight()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
TCoffeeScoreFileTest.testReadBlock()[pri:0, instance:jalview.io.TCoffeeScoreFileTest@60b85ba1]
OverviewDimensionsHideHiddenTest.testPositionInBox()[pri:0, instance:jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2]
HiddenSequencesTest.testGetSize()[pri:0, instance:jalview.datamodel.HiddenSequencesTest@6754ef00]
HiddenColumnsTest.testGetNextHiddenBoundary_Left()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
ConditionTest.testToString()[pri:0, instance:jalview.util.matcher.ConditionTest@3b582111]
ResidueCountTest.testGetTooltip()[pri:0, instance:jalview.datamodel.ResidueCountTest@24b52d3e]
ArgsParserTest.testGetValue_decoded()[pri:0, instance:jalview.bin.ArgsParserTest@10b3df93]
SequenceOntologyTest.testIsA()[pri:0, instance:jalview.ext.so.SequenceOntologyTest@3f3c966c]
AAStructureBindingModelTest.testFindSuperposableResidues_hiddenColumn()[pri:0, instance:jalview.structures.models.AAStructureBindingModelTest@3d9fc57a]
PopupMenuTest.testAddFeatureDetails_linkedFeatures()[pri:0, instance:jalview.gui.PopupMenuTest@467f77a5]
StartRegionIteratorTest.testBasicBoundsIterator()[pri:0, instance:jalview.datamodel.StartRegionIteratorTest@47a64f7d]
FinderTest.testFind_inDescription()[pri:0, instance:jalview.analysis.FinderTest@3a7b503d]
MappingUtilsTest.testRemoveStartPositions()[pri:0, instance:jalview.util.MappingUtilsTest@54e81b21]
ParseHtmlBodyAndLinksTest.testParseHtml_withLinksWithParameters()[pri:0, instance:jalview.util.ParseHtmlBodyAndLinksTest@44ea608c]
ScalePanelTest.testPreventNegativeStartColumn()[pri:0, instance:jalview.gui.ScalePanelTest@420bc288]
StringUtilsTest.testArrayToSeparatorList()[pri:0, instance:jalview.util.StringUtilsTest@632aa1a3]
AlignmentUtilsTests.testAlignAsSameSequences()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
TrimRegionCommandTest.testTrimLeft_oneColumn()[pri:0, instance:jalview.commands.TrimRegionCommandTest@4ced35ed]
FinderTest.testFind_findNext()[pri:0, instance:jalview.analysis.FinderTest@3a7b503d]
FeaturesFileTest.testPrintJalviewFormat()[pri:0, instance:jalview.io.FeaturesFileTest@214894fc]
AllRowsIteratorTest.testOneElement()[pri:0, instance:jalview.datamodel.AllRowsIteratorTest@18e8473e]
StartRegionIteratorTest.testBoundsIteratorUsingNullCursor()[pri:0, instance:jalview.datamodel.StartRegionIteratorTest@47a64f7d]
PhylipFileTests.testInterleavedIO()[pri:0, instance:jalview.io.PhylipFileTests@79ab3a71]
MatrixTest.testReverseRange_swapMinMax()[pri:0, instance:jalview.math.MatrixTest@59221b97]
ResidueTest.testFindAtom()[pri:0, instance:mc_view.ResidueTest@74518890]
SparseCountTest.testOverflow()[pri:0, instance:jalview.util.SparseCountTest@1af1347d]
SequenceGroupTest.testSetContext()[pri:0, instance:jalview.datamodel.SequenceGroupTest@3a45c42a]
TCoffeeScoreFileTest.testGetAsList()[pri:0, instance:jalview.io.TCoffeeScoreFileTest@60b85ba1]
DnaTest.testTranslateCdna_withUntranslatableCodons()[pri:0, instance:jalview.analysis.DnaTest@29d2d081]
SparseIntArrayTest.testCheckOverflow()[pri:0, instance:jalview.ext.android.SparseIntArrayTest@10ad20cb]
AlignedCodonFrameTest.testFindAlignedSequence()[pri:0, instance:jalview.datamodel.AlignedCodonFrameTest@7bd69e82]
ColumnSelectionTest.testCopyConstructor()[pri:0, instance:jalview.datamodel.ColumnSelectionTest@3ad394e6]
ConditionTest.testFromString()[pri:0, instance:jalview.util.matcher.ConditionTest@3b582111]
MatrixTest.testPreMultiply_tooManyColumns()[pri:0, instance:jalview.math.MatrixTest@59221b97]
ColorUtilsTest.testCreateColourFromName()[pri:0, instance:jalview.util.ColorUtilsTest@4a8b5227]
PDBfileTest.testIsRna()[pri:0, instance:mc_view.PDBfileTest@515f4131]
ViewportRangesTest.testScrollRight()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
VCFReaderTest.testReadVcf_plain()[pri:0, instance:jalview.ext.htsjdk.VCFReaderTest@13c612bd]
ConditionTest.testGetStableName()[pri:0, instance:jalview.util.matcher.ConditionTest@3b582111]
OverviewResColourFinderTest.testGetResidueBoxColour_zappo()[pri:0, instance:jalview.renderer.OverviewResColourFinderTest@5d332969]
HiddenSequencesTest.testHideShowSequence()[pri:0, instance:jalview.datamodel.HiddenSequencesTest@6754ef00]
FeatureColourFinderTest.testFindFeatureAtEnd()[pri:0, instance:jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f]
BuriedColourSchemeTest.testFindColour()[pri:0, instance:jalview.schemes.BuriedColourSchemeTest@1f2d2181]
FeatureColourFinderTest.testFindFeatureColour_noFeaturesShown()[pri:0, instance:jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f]
CustomUrlProviderTest.testDefaultUrl()[pri:0, instance:jalview.urls.CustomUrlProviderTest@3b4ef7]
AlignmentUtilsTests.testMakeCdsAlignment_multipleProteins()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
DnaTest.testGetComplement()[pri:0, instance:jalview.analysis.DnaTest@29d2d081]
ChimeraXCommandsTest.testOpenCommandFile()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569]
PDBFTSPanelTest.populateCmbSearchTargetOptionsTest()[pri:0, instance:jalview.fts.service.pdb.PDBFTSPanelTest@4102b1b1]
SequenceFeaturesTest.testIsOntologyTerm()[pri:0, instance:jalview.datamodel.features.SequenceFeaturesTest@70f43b45]
CigarArrayTest.testConstructor()[pri:0, instance:jalview.datamodel.CigarArrayTest@5a2f016d]
ScoreMatrixFileTest.testParseMatrix_aaindexFormat()[pri:0, instance:jalview.io.ScoreMatrixFileTest@3d829787]
SequenceAnnotationReportTest.testAppendFeatures_longText()[pri:0, instance:jalview.io.SequenceAnnotationReportTest@71652c98]
EditCommandTest.testUndo_cut()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
ResidueCountTest.test_countPeptide()[pri:0, instance:jalview.datamodel.ResidueCountTest@24b52d3e]
TDBeaconsFTSRestClientTest.getAllFTSDataColumns()[pri:0, instance:jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100]
EnsemblGeneTest.testGetIdentifyingFeatures()[pri:0, instance:jalview.ext.ensembl.EnsemblGeneTest@7bfc3126]
PDBChainTest.testSetChargeColours()[pri:0, instance:mc_view.PDBChainTest@3c49fab6]
MappingTest.testCopyConstructor()[pri:0, instance:jalview.datamodel.MappingTest@323e8306]
SequenceTest.testCheckValidRange()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
UrlLinkTest.testCreateLinksForNonDynamic()[pri:0, instance:jalview.util.UrlLinkTest@20765ed5]
FeatureMatcherTest.testIsByAttribute()[pri:0, instance:jalview.datamodel.features.FeatureMatcherTest@32c0915e]
MatcherTest.testConstructor()[pri:0, instance:jalview.util.matcher.MatcherTest@2899a8db]
ShmmrRSBSService.testShmmrService()[pri:0, instance:jalview.ws.rest.ShmmrRSBSService@15051a0]
ColourMenuHelperTest.testAddMenuItems_peptide()[pri:0, instance:jalview.gui.ColourMenuHelperTest@eadb475]
OverviewDimensionsHideHiddenTest.testFromMouseWithHiddenColsInMiddle()[pri:0, instance:jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2]
ProgressBarTest.testConstructor_prematureInstantiation()[pri:0, instance:jalview.gui.ProgressBarTest@1bb9aa43]
ShmmrRSBSService.testShmmrServiceDataprep()[pri:0, instance:jalview.ws.rest.ShmmrRSBSService@15051a0]
SeqCigarTest.testFindPosition()[pri:0, instance:jalview.datamodel.SeqCigarTest@6e9c413e]
SequenceTest.testSetDatasetSequence_cascading()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
SparseMatrixTest.testTred_matchesMatrix()[pri:0, instance:jalview.math.SparseMatrixTest@5a772895]
FeatureStoreTest.testFindFeatures_nested()[pri:0, instance:jalview.datamodel.features.FeatureStoreTest@106faf11]
JmolCommandsTest.testFocusView()[pri:0, instance:jalview.ext.jmol.JmolCommandsTest@3ef41c66]
CrossRefTest.testFindXrefSequences_fromDbRefMap()[pri:0, instance:jalview.analysis.CrossRefTest@3c8bdd5b]
SequenceAnnotationReportTest.testAppendFeature_disulfideBond()[pri:0, instance:jalview.io.SequenceAnnotationReportTest@71652c98]
SequenceFeatureTest.testEqualsAndHashCode()[pri:0, instance:jalview.datamodel.SequenceFeatureTest@5af5def9]
AnnotationSorterTest.testSort_timingSemisorted()[pri:0, instance:jalview.analysis.AnnotationSorterTest@50b8ae8d]
FeatureDistanceModelTest.testFeatureScoreModel()[pri:0, instance:jalview.analysis.scoremodels.FeatureDistanceModelTest@3153ddfc]
ChimeraXCommandsTest.testGetAtomSpec_alphaOnly()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569]
ChimeraCommandsTest.testShowBackbone()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
FinderTest.testFindAll_inSelection()[pri:0, instance:jalview.analysis.FinderTest@3a7b503d]
HiddenColumnsCursorTest.testFindRegionForColumn_Visible()[pri:0, instance:jalview.datamodel.HiddenColumnsCursorTest@1deb2c43]
TCoffeeScoreFileTest.testHeightAndWidth()[pri:0, instance:jalview.io.TCoffeeScoreFileTest@60b85ba1]
FeatureDistanceModelTest.testFeatureScoreModel_HiddenColumns()[pri:0, instance:jalview.analysis.scoremodels.FeatureDistanceModelTest@3153ddfc]
GffHelperBaseTest.testParseNameValuePairs()[pri:0, instance:jalview.io.gff.GffHelperBaseTest@1a1d3c1a]
UrlLinkDisplayTest.testName()[pri:0, instance:jalview.urls.UrlLinkDisplayTest@1ad777f]
SeqPanelTest.testGetEditStatusMessage()[pri:0, instance:jalview.gui.SeqPanelTest@308a6984]
PfamFormatInputTest.testPfamFormatNoLimits()[pri:0, instance:jalview.io.PfamFormatInputTest@5a12c728]
FeatureColourTest.testGetColor_colourByAttributeText()[pri:0, instance:jalview.schemes.FeatureColourTest@7668d560]
AnnotationChooserTest.testDeselectType_showForAll()[pri:0, instance:jalview.gui.AnnotationChooserTest@63a5e46c]
ColorUtilsTest.testBrighterThan()[pri:0, instance:jalview.util.ColorUtilsTest@4a8b5227]
ColumnSelectionTest.testGetSelected_concurrentModification()[pri:0, instance:jalview.datamodel.ColumnSelectionTest@3ad394e6]
BackupFilesTest.backupsEnabledReverseRollMaxTest()[pri:0, instance:jalview.io.BackupFilesTest@bae47a0]
BackupFilesTest.noBackupsEnabledTest()[pri:0, instance:jalview.io.BackupFilesTest@bae47a0]
EditCommandTest.testPriorState_removeGappedCols()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
TurnColourSchemeTest.testFindColour()[pri:0, instance:jalview.schemes.TurnColourSchemeTest@36b6964d]
AlignmentTest.testVerifyAlignmentDatasetRefs()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
ScoreMatrixFileTest.testParseMatrix_ncbiFormat()[pri:0, instance:jalview.io.ScoreMatrixFileTest@3d829787]
ResiduePropertiesTest.testGetResidues_peptide()[pri:0, instance:jalview.schemes.ResiduePropertiesTest@1e34c607]
UrlLinkDisplayTest.testDescription()[pri:0, instance:jalview.urls.UrlLinkDisplayTest@1ad777f]
ViewportRangesTest.testSetStartEndResWrapped()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
SequenceTest.testFindPositionMap()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
DBRefEntryTest.testEqualRef()[pri:0, instance:jalview.datamodel.DBRefEntryTest@42deb43a]
OverviewDimensionsHideHiddenTest.testSetBoxFromMouseClick()[pri:0, instance:jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2]
ViewportRangesTest.testSetStartEndSeq()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
MapListTest.testGetRanges()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
TDBeaconsFTSRestClientTest.getTDBIdColumIndexTest()[pri:0, instance:jalview.fts.threedbeacons.TDBeaconsFTSRestClientTest@3a71c100]
AAFrequencyTest.testCompleteConsensus_includeGaps_showLogo()[pri:0, instance:jalview.analysis.AAFrequencyTest@6e0ff644]
ResidueColourFinderTest.testGetResidueColour_none()[pri:0, instance:jalview.renderer.ResidueColourFinderTest@7cc9ce8]
StructureSelectionManagerTest.testSetMapping_seqFeatures()[pri:0, instance:jalview.structure.StructureSelectionManagerTest@5dda14d0]
AnnotationChooserTest.testSelectType_showForAll()[pri:0, instance:jalview.gui.AnnotationChooserTest@63a5e46c]
SparseCountTest.testPut()[pri:0, instance:jalview.util.SparseCountTest@1af1347d]
CrossRefTest.testSearchDataset()[pri:0, instance:jalview.analysis.CrossRefTest@3c8bdd5b]
SequenceFeaturesTest.testGetFeaturesForGroup()[pri:0, instance:jalview.datamodel.features.SequenceFeaturesTest@70f43b45]
SequenceTest.testGapMap()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
TestAlignSeq.testGetMappingForS1()[pri:0, instance:jalview.analysis.TestAlignSeq@3704122f]
ClustalFileTest.testParse_noNumbering()[pri:0, instance:jalview.io.ClustalFileTest@85ec632]
ColumnSelectionTest.testStretchGroup_expand()[pri:0, instance:jalview.datamodel.ColumnSelectionTest@3ad394e6]
PIDColourSchemeTest.testFindColour()[pri:0, instance:jalview.schemes.PIDColourSchemeTest@5c371e13]
VisibleContigsIteratorTest.testSimpleVisibleRegions()[pri:0, instance:jalview.datamodel.VisibleContigsIteratorTest@33d05366]
QuickSortTest.testSortByInt()[pri:0, instance:jalview.util.QuickSortTest@450794b4]
Blosum62ColourSchemeTest.testFindColour()[pri:0, instance:jalview.schemes.Blosum62ColourSchemeTest@6d2260db]
HiddenSequencesTest.testFindIndexNFromRow()[pri:0, instance:jalview.datamodel.HiddenSequencesTest@6754ef00]
VCFLoaderTest.testDoLoad_reverseStrand()[pri:0, instance:jalview.io.vcf.VCFLoaderTest@17ae98d7]
FeatureMatcherSetTest.testMatches_byAttribute()[pri:0, instance:jalview.datamodel.features.FeatureMatcherSetTest@33aa93c]
AlignmentTest.testDeleteAllAnnotations_includingAutocalculated()[pri:0, instance:jalview.datamodel.AlignmentTest@27dc79f7]
ColumnSelectionTest.testGetSelected()[pri:0, instance:jalview.datamodel.ColumnSelectionTest@3ad394e6]
EnsemblGenomeTest.testRetainFeature()[pri:0, instance:jalview.ext.ensembl.EnsemblGenomeTest@3e792ce3]
RangeElementsIteratorTest.testLastNextStartHidden()[pri:0, instance:jalview.datamodel.RangeElementsIteratorTest@3301500b]
NewickFileTests.testTreeIO()[pri:0, instance:jalview.io.NewickFileTests@49bd54f7]
NewickFileTests.testTreeIO()[pri:0, instance:jalview.io.NewickFileTests@6b5f8707]
NewickFileTests.testTreeIO()[pri:0, instance:jalview.io.NewickFileTests@772485dd]
ChimeraXCommandsTest.testColourByChain()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569]
UrlLinkTableModelTest.testInitialisation()[pri:0, instance:jalview.urls.UrlLinkTableModelTest@5bbbdd4b]
ChimeraXCommandsTest.testSetBackgroundColour()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569]
FTSRestClientTest.getColumnMaxWidthTest()[pri:0, instance:jalview.fts.core.FTSRestClientTest@11ee02f8]
ChimeraCommandsTest.testColourByChain()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
AlignmentAnnotationTests.testMakeVisibleAnnotation()[pri:0, instance:jalview.datamodel.AlignmentAnnotationTests@6831d8fd]
Jalview2xmlTests.testStoreAndRecoverPDBEntry()[pri:0, instance:jalview.project.Jalview2xmlTests@39fc6b2c]
PymolCommandsTest.testOpenCommandFile()[pri:0, instance:jalview.ext.pymol.PymolCommandsTest@5f577419]
HiddenColumnsTest.testGetRegionWithEdgeAtRes()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
Jalview2xmlTests.testStoreAndRecoverExpandedviews()[pri:0, instance:jalview.project.Jalview2xmlTests@39fc6b2c]
OverviewDimensionsHideHiddenTest.testConstructor()[pri:0, instance:jalview.viewmodel.OverviewDimensionsHideHiddenTest@1e8823d2]
ProgressBarTest.testSetProgressBar()[pri:0, instance:jalview.gui.ProgressBarTest@1bb9aa43]
ResidueCountTest.test_unexpectedNucleotide()[pri:0, instance:jalview.datamodel.ResidueCountTest@24b52d3e]
EditCommandTest.testPriorState_removeAllGaps()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
AlignViewportTest.testUpdateConservation_qualityOnly()[pri:0, instance:jalview.gui.AlignViewportTest@437e951d]
ColourSchemesTest.testRegisterColourScheme()[pri:0, instance:jalview.schemes.ColourSchemesTest@3fcdcf]
SequenceGroupTest.testCopyConstructor()[pri:0, instance:jalview.datamodel.SequenceGroupTest@3a45c42a]
HelpTest.checkHelpTargets()[pri:0, instance:jalview.gui.HelpTest@5cad8b7d]
VisibleRowsIteratorTest.testHasNextAndNextWithHidden()[pri:0, instance:jalview.datamodel.VisibleRowsIteratorTest@27a0a5a2]
PDBFTSRestClientTest.getPDBDocFieldsAsCommaDelimitedStringTest()[pri:0, instance:jalview.fts.service.pdb.PDBFTSRestClientTest@61a5b4ae]
PDBChainTest.testSetChainColours_colourScheme()[pri:0, instance:mc_view.PDBChainTest@3c49fab6]
FileIOTester.testGzipIo()[pri:0, instance:jalview.io.FileIOTester@e362c57]
FeatureDistanceModelTest.testFeatureScoreModel_hiddenFirstColumn()[pri:0, instance:jalview.analysis.scoremodels.FeatureDistanceModelTest@3153ddfc]
PymolCommandsTest.testSuperposeStructures()[pri:0, instance:jalview.ext.pymol.PymolCommandsTest@5f577419]
ScoreMatrixTest.testIsSymmetric()[pri:0, instance:jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7]
ComparisonTest.testIsNucleotide()[pri:0, instance:jalview.util.ComparisonTest@54f5f647]
EnsemblGeneTest.testRetainFeature()[pri:0, instance:jalview.ext.ensembl.EnsemblGeneTest@7bfc3126]
IdentifyFileTest.testIdentify_featureFile()[pri:0, instance:jalview.io.IdentifyFileTest@e27ba81]
MapListTest.testIsToForwardsStrand()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
VCFReaderTest.testQuery_plain()[pri:0, instance:jalview.ext.htsjdk.VCFReaderTest@13c612bd]
EmblFlatFileTest.testAdjustForProteinLength()[pri:0, instance:jalview.io.EmblFlatFileTest@5fd9b663]
TrimRegionCommandTest.testTrimRight_noColumns()[pri:0, instance:jalview.commands.TrimRegionCommandTest@4ced35ed]
HiddenColumnsTest.testOffsetByVisibleColumns()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
ResidueColourFinderTest.testGetResidueColour_userdef()[pri:0, instance:jalview.renderer.ResidueColourFinderTest@7cc9ce8]
QuickSortTest.testSort_charSortByFloat_mostlyZeroValues()[pri:0, instance:jalview.util.QuickSortTest@450794b4]
MessageManagerTest.testGetString_invalid()[pri:0, instance:jalview.util.MessageManagerTest@6650813a]
ColorUtilsTest.testGetGraduatedColour()[pri:0, instance:jalview.util.ColorUtilsTest@4a8b5227]
EditCommandTest.testCut()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
ViewportRangesTest.testSetViewportStartAndWidth()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
AlignmentPanelTest.testGetVisibleWidth()[pri:0, instance:jalview.gui.AlignmentPanelTest@77b325b3]
ExonerateHelperTest.testGetMappingType()[pri:0, instance:jalview.io.gff.ExonerateHelperTest@d71adc2]
ConservationTest.testVerdict()[pri:0, instance:jalview.analysis.ConservationTest@51c929ae]
MatcherTest.testMatches_floatValueIntegerCondition()[pri:0, instance:jalview.util.matcher.MatcherTest@2899a8db]
SearchResultsTest.testMatchConstructor()[pri:0, instance:jalview.datamodel.SearchResultsTest@15deb1dc]
TestHtsContigDb.testGetSequenceProxy()[pri:0, instance:jalview.ext.htsjdk.TestHtsContigDb@54a3ab8f]
JSONFileTest.hiddenColsTest()[pri:0, instance:jalview.io.JSONFileTest@54336c81]
UrlProviderTest.testSetDefaultUrlWrongly()[pri:0, instance:jalview.urls.UrlProviderTest@438bad7c]
EnsemblCdnaTest.testIsValidReference()[pri:0, instance:jalview.ext.ensembl.EnsemblCdnaTest@2c282004]
SearchResultsTest.testMarkColumns()[pri:0, instance:jalview.datamodel.SearchResultsTest@15deb1dc]
FileIOTester.testNonGzipURLIO()[pri:0, instance:jalview.io.FileIOTester@e362c57]
HiddenColumnsTest.testRevealAllHiddenColumns()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
ViewportRangesTest.testGetWrappedScrollPosition()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
ColourSchemesTest.testNameExists()[pri:0, instance:jalview.schemes.ColourSchemesTest@3fcdcf]
ConservationTest.testCalculate_threshold()[pri:0, instance:jalview.analysis.ConservationTest@51c929ae]
ViewportRangesTest.testEventFiring()[pri:0, instance:jalview.viewmodel.ViewportRangesTest@76b0ae1b]
AnnotationLabelsTest.testGetStatusMessage()[pri:0, instance:jalview.gui.AnnotationLabelsTest@49ef32e0]
JmolCommandsTest.testColourByChain()[pri:0, instance:jalview.ext.jmol.JmolCommandsTest@3ef41c66]
PymolCommandsTest.testColourByChain()[pri:0, instance:jalview.ext.pymol.PymolCommandsTest@5f577419]
FeatureStoreTest.testListContains()[pri:0, instance:jalview.datamodel.features.FeatureStoreTest@106faf11]
Jalview2xmlTests.testSaveLoadFeatureColoursAndFilters()[pri:0, instance:jalview.project.Jalview2xmlTests@39fc6b2c]
Gff3HelperTest.testProcessCdnaMatch_forwardToReverse()[pri:0, instance:jalview.io.gff.Gff3HelperTest@3add81c4]
FeatureMatcherTest.testGetMatcher()[pri:0, instance:jalview.datamodel.features.FeatureMatcherTest@32c0915e]
JmolCommandsTest.testSetBackgroundColour()[pri:0, instance:jalview.ext.jmol.JmolCommandsTest@3ef41c66]
AllColsIteratorTest.testLastNext()[pri:0, instance:jalview.datamodel.AllColsIteratorTest@5cbf9e9f]
ChimeraCommandsTest.testSetAttributes()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
AlignmentUtilsTests.testHaveCrossRef()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
MatrixTest.testEquals()[pri:0, instance:jalview.math.MatrixTest@59221b97]
UrlLinkTest.testUrlLinkCreationWithRegex()[pri:0, instance:jalview.util.UrlLinkTest@20765ed5]
FeatureColourFinderTest.testFindFeatureColour_featureGroupNotDisplayed()[pri:0, instance:jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f]
InterProScanHelperTest.testProcessProteinMatch()[pri:0, instance:jalview.io.gff.InterProScanHelperTest@57dc9128]
EditCommandTest.testAddEdit_multipleInsertGap()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
ScoreMatrixTest.testGetMatrixIndex()[pri:0, instance:jalview.analysis.scoremodels.ScoreMatrixTest@28a2a3e7]
SequenceTest.testDeriveSequence_noDatasetGapped()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
EditCommandTest.testReplace()[pri:0, instance:jalview.commands.EditCommandTest@12f3afb5]
SequenceGroupTest.testConstructor_list()[pri:0, instance:jalview.datamodel.SequenceGroupTest@3a45c42a]
AlignmentUtilsTests.testExpandContext_annotation()[pri:0, instance:jalview.analysis.AlignmentUtilsTests@54e7391d]
ArgsParserTest.testNextValue()[pri:0, instance:jalview.bin.ArgsParserTest@10b3df93]
ExonerateHelperTest.testProcessGffSimilarity_protein2dna_forward_targetgff()[pri:0, instance:jalview.io.gff.ExonerateHelperTest@d71adc2]
StructureSelectionManagerTest.testRegisterMapping()[pri:0, instance:jalview.structure.StructureSelectionManagerTest@5dda14d0]
FeatureColourFinderTest.testFindFeatureColour_contactFeature()[pri:0, instance:jalview.renderer.seqfeatures.FeatureColourFinderTest@4837595f]
UrlLinkTest.testMakeUrlNoRegex()[pri:0, instance:jalview.util.UrlLinkTest@20765ed5]
SparseCountTest.testAdd()[pri:0, instance:jalview.util.SparseCountTest@1af1347d]
MapListTest.testGetOverlapsInFrom_withIntrons()[pri:0, instance:jalview.util.MapListTest@27f0ad19]
HiddenColumnsTest.testHideColumns_BitSet()[pri:0, instance:jalview.datamodel.HiddenColumnsTest@3bb9efbc]
ChimeraXCommandsTest.testFocusView()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraXCommandsTest@6a175569]
SequenceTest.testGetAlignmentAnnotations_forCalcIdAndLabel()[pri:0, instance:jalview.datamodel.SequenceTest@36dce7ed]
SeqCanvasTest.testCalculateWrappedGeometry_noAnnotations()[pri:0, instance:jalview.gui.SeqCanvasTest@df5f5c0]
AppVarnaTest.testReplaceOddGaps()[pri:0, instance:jalview.gui.AppVarnaTest@61e3a1fd]
AlignmentAnnotationTests.testLiftOver()[pri:0, instance:jalview.datamodel.AlignmentAnnotationTests@6831d8fd]
StructureCommandTest.testEquals()[pri:0, instance:jalview.structure.StructureCommandTest@aa5455e]
ChimeraCommandsTest.testListResidueAttributes()[pri:0, instance:jalview.ext.rbvi.chimera.ChimeraCommandsTest@3d526ad9]
GroupingTest.testMakeGroupsWithBoth()[pri:0, instance:jalview.analysis.GroupingTest@160c3ec1]
QuickSortTest.testSort_byFloatValues()[pri:0, instance:jalview.util.QuickSortTest@450794b4]
Not-bambooAlignmentPanelTest.testGetVisibleWidth()[pri:0, instance:jalview.gui.AlignmentPanelTest@77b325b3]
TimingMatrixTest.testFindMinMax_timing()[pri:0, instance:jalview.math.MatrixTest@59221b97]